Protein–RNA interactions for Protein: P10747

CD28, T-cell-specific surface glycoprotein CD28, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD28P10747 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
CD28P10747 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CD28P10747 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CD28P10747 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CD28P10747 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC13.8□□□□□ -0.2
CD28P10747 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC13.8□□□□□ -0.2
CD28P10747 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CD28P10747 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CD28P10747 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CD28P10747 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CD28P10747 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CD28P10747 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CD28P10747 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC13.79□□□□□ -0.2
CD28P10747 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC13.79□□□□□ -0.2
CD28P10747 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CD28P10747 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CD28P10747 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CD28P10747 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CD28P10747 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
CD28P10747 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
CD28P10747 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CD28P10747 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CD28P10747 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
CD28P10747 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CD28P10747 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
CD28P10747 CENPM-204ENST00000402420 688 ntTSL 5 BASIC13.79□□□□□ -0.2
CD28P10747 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC13.79□□□□□ -0.2
CD28P10747 CD63-204ENST00000546939 779 ntTSL 3 BASIC13.79□□□□□ -0.2
CD28P10747 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC13.79□□□□□ -0.2
CD28P10747 AC105339.3-201ENST00000560043 636 ntBASIC13.79□□□□□ -0.2
CD28P10747 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC13.79□□□□□ -0.2
CD28P10747 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CD28P10747 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC13.79□□□□□ -0.2
CD28P10747 SP100-208ENST00000427101 1922 ntTSL 2 BASIC13.79□□□□□ -0.2
CD28P10747 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CD28P10747 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CD28P10747 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC13.79□□□□□ -0.2
CD28P10747 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CD28P10747 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC13.79□□□□□ -0.2
CD28P10747 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CD28P10747 AP002414.3-201ENST00000589352 1468 ntBASIC13.79□□□□□ -0.2
CD28P10747 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CD28P10747 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC13.79□□□□□ -0.2
CD28P10747 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CD28P10747 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CD28P10747 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CD28P10747 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC13.78□□□□□ -0.2
CD28P10747 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC13.78□□□□□ -0.2
CD28P10747 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CD28P10747 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC13.78□□□□□ -0.2
CD28P10747 BX842568.4-201ENST00000421222 227 ntBASIC13.78□□□□□ -0.2
CD28P10747 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC13.78□□□□□ -0.2
CD28P10747 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC13.78□□□□□ -0.2
CD28P10747 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC13.78□□□□□ -0.2
CD28P10747 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CD28P10747 AC122714.2-201ENST00000502787 707 ntBASIC13.78□□□□□ -0.2
CD28P10747 RNA5SP415-201ENST00000517246 115 ntBASIC13.78□□□□□ -0.2
CD28P10747 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC13.78□□□□□ -0.2
CD28P10747 AC145285.3-201ENST00000564603 959 ntBASIC13.78□□□□□ -0.2
CD28P10747 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC13.78□□□□□ -0.2
CD28P10747 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC13.78□□□□□ -0.2
CD28P10747 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CD28P10747 AC107918.4-202ENST00000641623 219 ntBASIC13.78□□□□□ -0.2
CD28P10747 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC13.78□□□□□ -0.2
CD28P10747 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC13.78□□□□□ -0.2
CD28P10747 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC13.78□□□□□ -0.2
CD28P10747 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
CD28P10747 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CD28P10747 AC079776.2-201ENST00000641154 1609 ntBASIC13.78□□□□□ -0.2
CD28P10747 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CD28P10747 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
CD28P10747 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CD28P10747 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
CD28P10747 AC004817.3-201ENST00000602957 2129 ntBASIC13.78□□□□□ -0.2
CD28P10747 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC13.78□□□□□ -0.2
CD28P10747 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC13.78□□□□□ -0.2
CD28P10747 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CD28P10747 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CD28P10747 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC13.78□□□□□ -0.2
CD28P10747 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC13.78□□□□□ -0.2
CD28P10747 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CD28P10747 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC13.78□□□□□ -0.2
CD28P10747 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CD28P10747 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC13.77□□□□□ -0.2
CD28P10747 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
CD28P10747 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC13.77□□□□□ -0.2
CD28P10747 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
CD28P10747 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
CD28P10747 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
CD28P10747 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
CD28P10747 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
CD28P10747 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
CD28P10747 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
CD28P10747 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CD28P10747 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CD28P10747 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CD28P10747 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CD28P10747 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.21
CD28P10747 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CD28P10747 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms