Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
APOBP04114 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
APOBP04114 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
APOBP04114 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
APOBP04114 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
APOBP04114 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC10.88□□□□□ -0.67
APOBP04114 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
APOBP04114 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC10.88□□□□□ -0.67
APOBP04114 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC10.88□□□□□ -0.67
APOBP04114 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
APOBP04114 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
APOBP04114 AL158211.3-201ENST00000607385 239 ntBASIC10.88□□□□□ -0.67
APOBP04114 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC10.88□□□□□ -0.67
APOBP04114 AC009949.1-201ENST00000623048 1830 ntBASIC10.88□□□□□ -0.67
APOBP04114 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
APOBP04114 AC005332.7-201ENST00000614046 2005 ntBASIC10.88□□□□□ -0.67
APOBP04114 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC10.88□□□□□ -0.67
APOBP04114 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
APOBP04114 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
APOBP04114 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
APOBP04114 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
APOBP04114 DDX43P3-201ENST00000441064 443 ntBASIC10.88□□□□□ -0.67
APOBP04114 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC10.88□□□□□ -0.67
APOBP04114 CD7-202ENST00000578509 925 ntTSL 3 BASIC10.88□□□□□ -0.67
APOBP04114 AL662799.1-202ENST00000614205 422 ntBASIC10.88□□□□□ -0.67
APOBP04114 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC10.88□□□□□ -0.67
APOBP04114 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
APOBP04114 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC10.88□□□□□ -0.67
APOBP04114 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC10.88□□□□□ -0.67
APOBP04114 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC10.88□□□□□ -0.67
APOBP04114 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
APOBP04114 AC079776.1-201ENST00000401540 1152 ntBASIC10.87□□□□□ -0.67
APOBP04114 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC10.87□□□□□ -0.67
APOBP04114 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
APOBP04114 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC10.87□□□□□ -0.67
APOBP04114 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC10.87□□□□□ -0.67
APOBP04114 PI4KAP1-204ENST00000612579 1703 ntBASIC10.87□□□□□ -0.67
APOBP04114 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC10.87□□□□□ -0.67
APOBP04114 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC10.87□□□□□ -0.67
APOBP04114 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
APOBP04114 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC10.87□□□□□ -0.67
APOBP04114 PC-208ENST00000529047 1607 ntTSL 3 BASIC10.87□□□□□ -0.67
APOBP04114 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
APOBP04114 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
APOBP04114 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
APOBP04114 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC10.87□□□□□ -0.67
APOBP04114 TSSK5P-201ENST00000423978 907 ntBASIC10.87□□□□□ -0.67
APOBP04114 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
APOBP04114 MMP17-203ENST00000535004 719 ntTSL 3 BASIC10.87□□□□□ -0.67
APOBP04114 NOP2-211ENST00000540228 668 ntTSL 2 BASIC10.87□□□□□ -0.67
APOBP04114 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC10.87□□□□□ -0.67
APOBP04114 AC027307.3-201ENST00000594262 1100 ntBASIC10.87□□□□□ -0.67
APOBP04114 AL138828.2-201ENST00000615812 383 ntBASIC10.87□□□□□ -0.67
APOBP04114 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC10.87□□□□□ -0.67
APOBP04114 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC10.87□□□□□ -0.67
APOBP04114 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
APOBP04114 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.67
APOBP04114 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
APOBP04114 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC10.87□□□□□ -0.67
APOBP04114 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC10.87□□□□□ -0.67
APOBP04114 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
APOBP04114 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC10.87□□□□□ -0.67
APOBP04114 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
APOBP04114 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
APOBP04114 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
APOBP04114 RBPMS2P1-201ENST00000437762 623 ntBASIC10.87□□□□□ -0.67
APOBP04114 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
APOBP04114 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
APOBP04114 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC10.87□□□□□ -0.67
APOBP04114 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC10.87□□□□□ -0.67
APOBP04114 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
APOBP04114 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
APOBP04114 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
APOBP04114 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC10.87□□□□□ -0.67
APOBP04114 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
APOBP04114 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
APOBP04114 VMA21-202ENST00000370361 693 ntTSL 5 BASIC10.87□□□□□ -0.67
APOBP04114 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC10.87□□□□□ -0.67
APOBP04114 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC10.87□□□□□ -0.67
APOBP04114 THTPA-204ENST00000554970 569 ntTSL 4 BASIC10.87□□□□□ -0.67
APOBP04114 THTPA-206ENST00000556015 535 ntTSL 3 BASIC10.87□□□□□ -0.67
APOBP04114 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
APOBP04114 SPDYE12P-201ENST00000618416 771 ntBASIC10.87□□□□□ -0.67
APOBP04114 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
APOBP04114 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
APOBP04114 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
APOBP04114 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC10.87□□□□□ -0.67
APOBP04114 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
APOBP04114 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC10.86□□□□□ -0.67
APOBP04114 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
APOBP04114 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC10.86□□□□□ -0.67
APOBP04114 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
APOBP04114 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC10.86□□□□□ -0.67
APOBP04114 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC10.86□□□□□ -0.67
APOBP04114 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC10.86□□□□□ -0.67
APOBP04114 HNRNPA1P40-201ENST00000426371 1278 ntBASIC10.86□□□□□ -0.67
APOBP04114 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC10.86□□□□□ -0.67
APOBP04114 API5-211ENST00000534695 560 ntTSL 5 BASIC10.86□□□□□ -0.67
APOBP04114 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC10.86□□□□□ -0.67
APOBP04114 POLE2-203ENST00000553805 496 ntTSL 2 BASIC10.86□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms