Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 METTL26-205ENST00000397666 726 ntTSL 2 BASIC21.4■■□□□ 1.02
COL4A1P02462 PAWRP1-201ENST00000451083 565 ntBASIC21.4■■□□□ 1.02
COL4A1P02462 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
COL4A1P02462 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
COL4A1P02462 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC21.4■■□□□ 1.02
COL4A1P02462 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC21.4■■□□□ 1.02
COL4A1P02462 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
COL4A1P02462 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL4A1P02462 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
COL4A1P02462 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
COL4A1P02462 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL4A1P02462 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL4A1P02462 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
COL4A1P02462 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL4A1P02462 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC21.39■■□□□ 1.01
COL4A1P02462 CEND1P1-201ENST00000451006 455 ntBASIC21.39■■□□□ 1.01
COL4A1P02462 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC21.39■■□□□ 1.01
COL4A1P02462 RPS15-207ENST00000591032 550 ntTSL 3 BASIC21.39■■□□□ 1.01
COL4A1P02462 AC116407.2-201ENST00000613639 860 ntBASIC21.39■■□□□ 1.01
COL4A1P02462 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC21.39■■□□□ 1.01
COL4A1P02462 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC21.39■■□□□ 1.01
COL4A1P02462 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL4A1P02462 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
COL4A1P02462 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL4A1P02462 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL4A1P02462 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL4A1P02462 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL4A1P02462 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL4A1P02462 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC21.38■■□□□ 1.01
COL4A1P02462 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC21.38■■□□□ 1.01
COL4A1P02462 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC21.38■■□□□ 1.01
COL4A1P02462 AC068137.2-201ENST00000605408 478 ntBASIC21.38■■□□□ 1.01
COL4A1P02462 AC093028.1-201ENST00000622998 982 ntBASIC21.38■■□□□ 1.01
COL4A1P02462 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC21.38■■□□□ 1.01
COL4A1P02462 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC21.38■■□□□ 1.01
COL4A1P02462 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC21.38■■□□□ 1.01
COL4A1P02462 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL4A1P02462 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL4A1P02462 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC21.38■■□□□ 1.01
COL4A1P02462 AC046185.3-201ENST00000623228 1824 ntBASIC21.38■■□□□ 1.01
COL4A1P02462 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
COL4A1P02462 ENSA-206ENST00000361631 725 ntTSL 2 BASIC21.37■■□□□ 1.01
COL4A1P02462 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
COL4A1P02462 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC21.37■■□□□ 1.01
COL4A1P02462 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC21.37■■□□□ 1.01
COL4A1P02462 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC21.37■■□□□ 1.01
COL4A1P02462 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC21.37■■□□□ 1.01
COL4A1P02462 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC21.37■■□□□ 1.01
COL4A1P02462 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
COL4A1P02462 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL4A1P02462 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL4A1P02462 AC099522.2-201ENST00000607001 744 ntBASIC21.37■■□□□ 1.01
COL4A1P02462 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL4A1P02462 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC21.37■■□□□ 1.01
COL4A1P02462 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC21.37■■□□□ 1.01
COL4A1P02462 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC21.37■■□□□ 1.01
COL4A1P02462 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL4A1P02462 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
COL4A1P02462 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL4A1P02462 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL4A1P02462 BICD1-207ENST00000551848 1962 ntBASIC21.37■■□□□ 1.01
COL4A1P02462 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
COL4A1P02462 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC21.37■■□□□ 1.01
COL4A1P02462 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL4A1P02462 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL4A1P02462 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL4A1P02462 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL4A1P02462 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL4A1P02462 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL4A1P02462 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC21.37■■□□□ 1.01
COL4A1P02462 CBR1-202ENST00000399191 838 ntTSL 3 BASIC21.37■■□□□ 1.01
COL4A1P02462 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC21.37■■□□□ 1.01
COL4A1P02462 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC21.37■■□□□ 1.01
COL4A1P02462 LINC02084-201ENST00000606069 1096 ntBASIC21.37■■□□□ 1.01
COL4A1P02462 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
COL4A1P02462 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
COL4A1P02462 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
COL4A1P02462 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC21.37■■□□□ 1.01
COL4A1P02462 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC21.37■■□□□ 1.01
COL4A1P02462 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL4A1P02462 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
COL4A1P02462 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL4A1P02462 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL4A1P02462 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
COL4A1P02462 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC21.36■■□□□ 1.01
COL4A1P02462 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC21.36■■□□□ 1.01
COL4A1P02462 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
COL4A1P02462 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
COL4A1P02462 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
COL4A1P02462 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL4A1P02462 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
COL4A1P02462 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL4A1P02462 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL4A1P02462 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL4A1P02462 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC21.36■■□□□ 1.01
COL4A1P02462 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC21.36■■□□□ 1.01
COL4A1P02462 CD63-210ENST00000550776 870 ntTSL 5 BASIC21.36■■□□□ 1.01
COL4A1P02462 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC21.36■■□□□ 1.01
COL4A1P02462 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL4A1P02462 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms