Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.08■□□□□ 0.64
RNF40O75150 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.64
RNF40O75150 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.08■□□□□ 0.64
RNF40O75150 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
RNF40O75150 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
RNF40O75150 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC19.08■□□□□ 0.64
RNF40O75150 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
RNF40O75150 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
RNF40O75150 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC19.08■□□□□ 0.64
RNF40O75150 KRT8P3-201ENST00000519669 1449 ntBASIC19.08■□□□□ 0.64
RNF40O75150 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
RNF40O75150 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
RNF40O75150 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
RNF40O75150 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
RNF40O75150 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF40O75150 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.07■□□□□ 0.64
RNF40O75150 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC19.07■□□□□ 0.64
RNF40O75150 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
RNF40O75150 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF40O75150 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
RNF40O75150 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF40O75150 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
RNF40O75150 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
RNF40O75150 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
RNF40O75150 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
RNF40O75150 HARS-201ENST00000307633 1780 ntTSL 2 BASIC19.07■□□□□ 0.64
RNF40O75150 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF40O75150 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF40O75150 FLJ13224-201ENST00000313737 1514 ntBASIC19.07■□□□□ 0.64
RNF40O75150 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF40O75150 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF40O75150 AC004870.1-201ENST00000315132 882 ntBASIC19.07■□□□□ 0.64
RNF40O75150 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.07■□□□□ 0.64
RNF40O75150 HLA-F-220ENST00000434407 884 ntBASIC19.07■□□□□ 0.64
RNF40O75150 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC19.07■□□□□ 0.64
RNF40O75150 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.07■□□□□ 0.64
RNF40O75150 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.07■□□□□ 0.64
RNF40O75150 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC19.07■□□□□ 0.64
RNF40O75150 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
RNF40O75150 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
RNF40O75150 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
RNF40O75150 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF40O75150 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
RNF40O75150 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF40O75150 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF40O75150 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.07■□□□□ 0.64
RNF40O75150 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
RNF40O75150 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF40O75150 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF40O75150 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
RNF40O75150 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF40O75150 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
RNF40O75150 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
RNF40O75150 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
RNF40O75150 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF40O75150 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF40O75150 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RNF40O75150 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC19.06■□□□□ 0.64
RNF40O75150 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
RNF40O75150 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
RNF40O75150 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RNF40O75150 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
RNF40O75150 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
RNF40O75150 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC19.06■□□□□ 0.64
RNF40O75150 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC19.06■□□□□ 0.64
RNF40O75150 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
RNF40O75150 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.06■□□□□ 0.64
RNF40O75150 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
RNF40O75150 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC19.06■□□□□ 0.64
RNF40O75150 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RNF40O75150 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
RNF40O75150 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RNF40O75150 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RNF40O75150 CHCHD2P8-201ENST00000429873 447 ntBASIC19.06■□□□□ 0.64
RNF40O75150 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
RNF40O75150 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
RNF40O75150 UNC93B7-201ENST00000509439 705 ntBASIC19.06■□□□□ 0.64
RNF40O75150 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
RNF40O75150 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19.06■□□□□ 0.64
RNF40O75150 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.06■□□□□ 0.64
RNF40O75150 MIR3917-201ENST00000580971 93 ntBASIC19.06■□□□□ 0.64
RNF40O75150 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.06■□□□□ 0.64
RNF40O75150 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.06■□□□□ 0.64
RNF40O75150 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC19.06■□□□□ 0.64
RNF40O75150 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RNF40O75150 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.06■□□□□ 0.64
RNF40O75150 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC19.06■□□□□ 0.64
RNF40O75150 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.06■□□□□ 0.64
RNF40O75150 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RNF40O75150 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RNF40O75150 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
RNF40O75150 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
RNF40O75150 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC19.06■□□□□ 0.64
RNF40O75150 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
RNF40O75150 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
RNF40O75150 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RNF40O75150 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
RNF40O75150 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RNF40O75150 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
RNF40O75150 AL391807.1-203ENST00000604392 2365 ntBASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms