Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.61■□□□□ 0.25
LDB3O75112 POM121L3P-201ENST00000419331 1163 ntBASIC16.61■□□□□ 0.25
LDB3O75112 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.61■□□□□ 0.25
LDB3O75112 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.61■□□□□ 0.25
LDB3O75112 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.61■□□□□ 0.25
LDB3O75112 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.61■□□□□ 0.25
LDB3O75112 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LDB3O75112 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB3O75112 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB3O75112 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
LDB3O75112 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB3O75112 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB3O75112 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB3O75112 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
LDB3O75112 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LDB3O75112 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.61■□□□□ 0.25
LDB3O75112 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB3O75112 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB3O75112 LINC00304-203ENST00000565008 1864 ntBASIC16.61■□□□□ 0.25
LDB3O75112 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
LDB3O75112 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LDB3O75112 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.61■□□□□ 0.25
LDB3O75112 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC16.61■□□□□ 0.25
LDB3O75112 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
LDB3O75112 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.6■□□□□ 0.25
LDB3O75112 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
LDB3O75112 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.6■□□□□ 0.25
LDB3O75112 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LDB3O75112 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.6■□□□□ 0.25
LDB3O75112 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.6■□□□□ 0.25
LDB3O75112 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDB3O75112 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LDB3O75112 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDB3O75112 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.6■□□□□ 0.25
LDB3O75112 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDB3O75112 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDB3O75112 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDB3O75112 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LDB3O75112 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDB3O75112 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.6■□□□□ 0.25
LDB3O75112 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDB3O75112 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.6■□□□□ 0.25
LDB3O75112 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.6■□□□□ 0.25
LDB3O75112 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.6■□□□□ 0.25
LDB3O75112 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.6■□□□□ 0.25
LDB3O75112 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.6■□□□□ 0.25
LDB3O75112 AC114341.1-201ENST00000618070 349 ntBASIC16.6■□□□□ 0.25
LDB3O75112 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDB3O75112 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LDB3O75112 INTS4P1-201ENST00000438455 1935 ntBASIC16.6■□□□□ 0.25
LDB3O75112 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.6■□□□□ 0.25
LDB3O75112 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LDB3O75112 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDB3O75112 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
LDB3O75112 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
LDB3O75112 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDB3O75112 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LDB3O75112 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.6■□□□□ 0.25
LDB3O75112 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LDB3O75112 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDB3O75112 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
LDB3O75112 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDB3O75112 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDB3O75112 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDB3O75112 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.59■□□□□ 0.25
LDB3O75112 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDB3O75112 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
LDB3O75112 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDB3O75112 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
LDB3O75112 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
LDB3O75112 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDB3O75112 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
LDB3O75112 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LDB3O75112 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.59■□□□□ 0.25
LDB3O75112 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.59■□□□□ 0.25
LDB3O75112 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDB3O75112 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.59■□□□□ 0.25
LDB3O75112 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.59■□□□□ 0.25
LDB3O75112 LINC00896-202ENST00000609602 2128 ntBASIC16.59■□□□□ 0.25
LDB3O75112 AL732292.2-201ENST00000609649 430 ntBASIC16.59■□□□□ 0.25
LDB3O75112 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.59■□□□□ 0.25
LDB3O75112 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDB3O75112 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.59■□□□□ 0.25
LDB3O75112 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDB3O75112 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDB3O75112 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDB3O75112 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.59■□□□□ 0.25
LDB3O75112 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LDB3O75112 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.59■□□□□ 0.25
LDB3O75112 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
LDB3O75112 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
LDB3O75112 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
LDB3O75112 PKD1P1-201ENST00000458669 6805 ntBASIC16.58■□□□□ 0.25
LDB3O75112 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
LDB3O75112 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
LDB3O75112 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
LDB3O75112 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
LDB3O75112 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LDB3O75112 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
LDB3O75112 AC122714.2-201ENST00000502787 707 ntBASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms