Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC22.05■■□□□ 1.12
CACNA1FO60840 AC108751.1-201ENST00000490852 363 ntBASIC22.05■■□□□ 1.12
CACNA1FO60840 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC22.05■■□□□ 1.12
CACNA1FO60840 AC004706.3-202ENST00000621574 984 ntBASIC22.05■■□□□ 1.12
CACNA1FO60840 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CACNA1FO60840 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC22.05■■□□□ 1.12
CACNA1FO60840 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CACNA1FO60840 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC22.05■■□□□ 1.12
CACNA1FO60840 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC22.05■■□□□ 1.12
CACNA1FO60840 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC22.05■■□□□ 1.12
CACNA1FO60840 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CACNA1FO60840 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC22.05■■□□□ 1.12
CACNA1FO60840 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CACNA1FO60840 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
CACNA1FO60840 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
CACNA1FO60840 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
CACNA1FO60840 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC22.05■■□□□ 1.12
CACNA1FO60840 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC22.05■■□□□ 1.12
CACNA1FO60840 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
CACNA1FO60840 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC22.04■■□□□ 1.12
CACNA1FO60840 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC22.04■■□□□ 1.12
CACNA1FO60840 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC22.04■■□□□ 1.12
CACNA1FO60840 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC22.04■■□□□ 1.12
CACNA1FO60840 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CACNA1FO60840 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CACNA1FO60840 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC22.04■■□□□ 1.12
CACNA1FO60840 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC22.04■■□□□ 1.12
CACNA1FO60840 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC22.04■■□□□ 1.12
CACNA1FO60840 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC22.04■■□□□ 1.12
CACNA1FO60840 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC22.04■■□□□ 1.12
CACNA1FO60840 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC22.04■■□□□ 1.12
CACNA1FO60840 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CACNA1FO60840 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CACNA1FO60840 AL133373.2-201ENST00000623187 2828 ntBASIC22.04■■□□□ 1.12
CACNA1FO60840 AC067852.2-201ENST00000590513 2313 ntBASIC22.04■■□□□ 1.12
CACNA1FO60840 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
CACNA1FO60840 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CACNA1FO60840 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CACNA1FO60840 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CACNA1FO60840 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
CACNA1FO60840 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
CACNA1FO60840 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CACNA1FO60840 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC22.03■■□□□ 1.12
CACNA1FO60840 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC22.03■■□□□ 1.12
CACNA1FO60840 PKD1P6-201ENST00000343738 4769 ntBASIC22.03■■□□□ 1.12
CACNA1FO60840 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CACNA1FO60840 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CACNA1FO60840 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CACNA1FO60840 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC22.03■■□□□ 1.12
CACNA1FO60840 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC22.03■■□□□ 1.12
CACNA1FO60840 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CACNA1FO60840 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC22.03■■□□□ 1.12
CACNA1FO60840 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC22.03■■□□□ 1.12
CACNA1FO60840 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC22.03■■□□□ 1.12
CACNA1FO60840 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC22.03■■□□□ 1.12
CACNA1FO60840 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
CACNA1FO60840 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC22.03■■□□□ 1.12
CACNA1FO60840 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CACNA1FO60840 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
CACNA1FO60840 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
CACNA1FO60840 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CACNA1FO60840 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
CACNA1FO60840 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CACNA1FO60840 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CACNA1FO60840 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC22.02■■□□□ 1.12
CACNA1FO60840 RPL13AP23-201ENST00000480739 586 ntBASIC22.02■■□□□ 1.12
CACNA1FO60840 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC22.02■■□□□ 1.12
CACNA1FO60840 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CACNA1FO60840 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CACNA1FO60840 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CACNA1FO60840 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CACNA1FO60840 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CACNA1FO60840 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC22.02■■□□□ 1.12
CACNA1FO60840 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.11
CACNA1FO60840 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CACNA1FO60840 RPS2P28-201ENST00000314255 741 ntBASIC22.01■■□□□ 1.11
CACNA1FO60840 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CACNA1FO60840 KRT18P58-201ENST00000527480 1120 ntBASIC22.01■■□□□ 1.11
CACNA1FO60840 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CACNA1FO60840 AC116407.3-201ENST00000623905 1129 ntBASIC22.01■■□□□ 1.11
CACNA1FO60840 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CACNA1FO60840 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
CACNA1FO60840 EGFEM1P-202ENST00000431685 1563 ntBASIC22.01■■□□□ 1.11
CACNA1FO60840 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CACNA1FO60840 HNRNPRP1-201ENST00000453465 1695 ntBASIC22.01■■□□□ 1.11
CACNA1FO60840 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CACNA1FO60840 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC22.01■■□□□ 1.11
CACNA1FO60840 LBH-204ENST00000406087 559 ntTSL 4 BASIC22.01■■□□□ 1.11
CACNA1FO60840 PAWRP1-201ENST00000451083 565 ntBASIC22.01■■□□□ 1.11
CACNA1FO60840 NMU-202ENST00000505262 693 ntTSL 3 BASIC22.01■■□□□ 1.11
CACNA1FO60840 PGAM5P1-201ENST00000518923 814 ntBASIC22.01■■□□□ 1.11
CACNA1FO60840 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC22.01■■□□□ 1.11
CACNA1FO60840 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC22.01■■□□□ 1.11
CACNA1FO60840 GGTLC5P-201ENST00000617623 998 ntBASIC22.01■■□□□ 1.11
CACNA1FO60840 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CACNA1FO60840 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CACNA1FO60840 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CACNA1FO60840 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC22■■□□□ 1.11
CACNA1FO60840 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
CACNA1FO60840 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms