Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
SSSCA1O60232 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC14.43□□□□□ -0.1
SSSCA1O60232 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC14.43□□□□□ -0.1
SSSCA1O60232 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
SSSCA1O60232 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SSSCA1O60232 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SSSCA1O60232 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SSSCA1O60232 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SSSCA1O60232 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SSSCA1O60232 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC14.42□□□□□ -0.1
SSSCA1O60232 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 LTF-203ENST00000426532 2494 ntTSL 2 BASIC14.42□□□□□ -0.1
SSSCA1O60232 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
SSSCA1O60232 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
SSSCA1O60232 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
SSSCA1O60232 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC14.42□□□□□ -0.1
SSSCA1O60232 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
SSSCA1O60232 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC14.42□□□□□ -0.1
SSSCA1O60232 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC14.42□□□□□ -0.1
SSSCA1O60232 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC14.42□□□□□ -0.1
SSSCA1O60232 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC14.42□□□□□ -0.1
SSSCA1O60232 AC073195.1-201ENST00000607241 877 ntBASIC14.42□□□□□ -0.1
SSSCA1O60232 AC116407.2-201ENST00000613639 860 ntBASIC14.42□□□□□ -0.1
SSSCA1O60232 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.42□□□□□ -0.1
SSSCA1O60232 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
SSSCA1O60232 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
SSSCA1O60232 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SSSCA1O60232 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
SSSCA1O60232 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SSSCA1O60232 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
SSSCA1O60232 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC14.41□□□□□ -0.1
SSSCA1O60232 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.41□□□□□ -0.1
SSSCA1O60232 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC14.41□□□□□ -0.1
SSSCA1O60232 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
SSSCA1O60232 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SSSCA1O60232 AC009949.1-201ENST00000623048 1830 ntBASIC14.41□□□□□ -0.1
SSSCA1O60232 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SSSCA1O60232 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SSSCA1O60232 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC14.41□□□□□ -0.1
SSSCA1O60232 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SSSCA1O60232 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SSSCA1O60232 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SSSCA1O60232 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SSSCA1O60232 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC14.41□□□□□ -0.1
SSSCA1O60232 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC14.41□□□□□ -0.1
SSSCA1O60232 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC14.41□□□□□ -0.1
SSSCA1O60232 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC14.41□□□□□ -0.1
SSSCA1O60232 AF186192.3-201ENST00000583427 947 ntBASIC14.41□□□□□ -0.1
SSSCA1O60232 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SSSCA1O60232 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
SSSCA1O60232 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SSSCA1O60232 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SSSCA1O60232 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
SSSCA1O60232 AC079328.2-201ENST00000561241 3354 ntBASIC14.41□□□□□ -0.1
SSSCA1O60232 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC14.41□□□□□ -0.1
SSSCA1O60232 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SSSCA1O60232 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC14.41□□□□□ -0.1
SSSCA1O60232 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SSSCA1O60232 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SSSCA1O60232 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
SSSCA1O60232 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
SSSCA1O60232 REXO1L11P-201ENST00000620964 1927 ntBASIC14.41□□□□□ -0.1
SSSCA1O60232 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SSSCA1O60232 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SSSCA1O60232 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC14.41□□□□□ -0.1
SSSCA1O60232 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SSSCA1O60232 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SSSCA1O60232 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SSSCA1O60232 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SSSCA1O60232 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SSSCA1O60232 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
SSSCA1O60232 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SSSCA1O60232 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.4□□□□□ -0.1
SSSCA1O60232 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC14.4□□□□□ -0.1
SSSCA1O60232 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
SSSCA1O60232 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms