Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CACNA1AO00555 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CACNA1AO00555 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CACNA1AO00555 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CACNA1AO00555 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC16.41■□□□□ 0.22
CACNA1AO00555 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC16.41■□□□□ 0.22
CACNA1AO00555 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
CACNA1AO00555 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CACNA1AO00555 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC16.41■□□□□ 0.22
CACNA1AO00555 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CACNA1AO00555 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CACNA1AO00555 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CACNA1AO00555 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CACNA1AO00555 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.41■□□□□ 0.22
CACNA1AO00555 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC16.41■□□□□ 0.22
CACNA1AO00555 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
CACNA1AO00555 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CACNA1AO00555 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.41■□□□□ 0.22
CACNA1AO00555 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC16.41■□□□□ 0.22
CACNA1AO00555 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CACNA1AO00555 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CACNA1AO00555 WASH6P-202ENST00000359512 1437 ntBASIC16.4■□□□□ 0.22
CACNA1AO00555 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CACNA1AO00555 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CACNA1AO00555 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CACNA1AO00555 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CACNA1AO00555 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CACNA1AO00555 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CACNA1AO00555 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC16.4■□□□□ 0.22
CACNA1AO00555 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
CACNA1AO00555 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.4■□□□□ 0.22
CACNA1AO00555 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.4■□□□□ 0.22
CACNA1AO00555 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CACNA1AO00555 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC16.4■□□□□ 0.22
CACNA1AO00555 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.4■□□□□ 0.22
CACNA1AO00555 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC16.4■□□□□ 0.22
CACNA1AO00555 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC16.4■□□□□ 0.22
CACNA1AO00555 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CACNA1AO00555 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CACNA1AO00555 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CACNA1AO00555 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CACNA1AO00555 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CACNA1AO00555 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CACNA1AO00555 EMC4-209ENST00000559421 497 ntTSL 2 BASIC16.4■□□□□ 0.22
CACNA1AO00555 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC16.4■□□□□ 0.22
CACNA1AO00555 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
CACNA1AO00555 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
CACNA1AO00555 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CACNA1AO00555 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CACNA1AO00555 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CACNA1AO00555 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CACNA1AO00555 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CACNA1AO00555 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC16.39■□□□□ 0.21
CACNA1AO00555 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC16.39■□□□□ 0.21
CACNA1AO00555 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.39■□□□□ 0.21
CACNA1AO00555 AC093004.1-201ENST00000508850 424 ntBASIC16.39■□□□□ 0.21
CACNA1AO00555 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC16.39■□□□□ 0.21
CACNA1AO00555 AGER-214ENST00000538695 487 ntTSL 2 BASIC16.39■□□□□ 0.21
CACNA1AO00555 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC16.39■□□□□ 0.21
CACNA1AO00555 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CACNA1AO00555 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC16.39■□□□□ 0.21
CACNA1AO00555 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CACNA1AO00555 AL023806.1-201ENST00000603994 1649 ntBASIC16.39■□□□□ 0.21
CACNA1AO00555 AC097637.2-201ENST00000624096 1997 ntBASIC16.39■□□□□ 0.21
CACNA1AO00555 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CACNA1AO00555 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC16.39■□□□□ 0.21
CACNA1AO00555 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CACNA1AO00555 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CACNA1AO00555 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.39■□□□□ 0.21
CACNA1AO00555 SLC7A15P-201ENST00000424028 1363 ntBASIC16.39■□□□□ 0.21
CACNA1AO00555 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CACNA1AO00555 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CACNA1AO00555 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CACNA1AO00555 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CACNA1AO00555 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CACNA1AO00555 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CACNA1AO00555 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CACNA1AO00555 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CACNA1AO00555 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC16.39■□□□□ 0.21
CACNA1AO00555 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC16.39■□□□□ 0.21
CACNA1AO00555 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CACNA1AO00555 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC16.39■□□□□ 0.21
CACNA1AO00555 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CACNA1AO00555 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CACNA1AO00555 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CACNA1AO00555 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.38■□□□□ 0.21
CACNA1AO00555 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.38■□□□□ 0.21
CACNA1AO00555 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CACNA1AO00555 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CACNA1AO00555 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.38■□□□□ 0.21
CACNA1AO00555 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CACNA1AO00555 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CACNA1AO00555 MIR346-201ENST00000362234 95 ntBASIC16.38■□□□□ 0.21
CACNA1AO00555 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CACNA1AO00555 STX1A-203ENST00000395155 783 ntTSL 2 BASIC16.38■□□□□ 0.21
CACNA1AO00555 AC104457.1-201ENST00000401024 814 ntBASIC16.38■□□□□ 0.21
CACNA1AO00555 AC087499.6-201ENST00000411576 835 ntBASIC16.38■□□□□ 0.21
CACNA1AO00555 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.38■□□□□ 0.21
CACNA1AO00555 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CACNA1AO00555 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms