Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC188H7C350 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CCDC188H7C350 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
CCDC188H7C350 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC188H7C350 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC188H7C350 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CCDC188H7C350 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.35■□□□□ 0.53
CCDC188H7C350 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC188H7C350 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC188H7C350 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC188H7C350 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC188H7C350 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC188H7C350 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
CCDC188H7C350 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC188H7C350 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC188H7C350 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC188H7C350 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC188H7C350 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC188H7C350 AC128688.1-201ENST00000487626 519 ntBASIC18.35■□□□□ 0.53
CCDC188H7C350 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC188H7C350 EGLN1P1-201ENST00000531623 762 ntBASIC18.35■□□□□ 0.53
CCDC188H7C350 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
CCDC188H7C350 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.35■□□□□ 0.53
CCDC188H7C350 AL157888.1-201ENST00000631930 593 ntBASIC18.35■□□□□ 0.53
CCDC188H7C350 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.35■□□□□ 0.53
CCDC188H7C350 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC188H7C350 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC188H7C350 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC188H7C350 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CCDC188H7C350 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC188H7C350 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC188H7C350 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CCDC188H7C350 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC188H7C350 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC188H7C350 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC188H7C350 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC188H7C350 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC188H7C350 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CCDC188H7C350 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC188H7C350 LINC02012-201ENST00000608206 1725 ntBASIC18.35■□□□□ 0.53
CCDC188H7C350 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC188H7C350 FLJ38576-201ENST00000623820 2459 ntBASIC18.34■□□□□ 0.53
CCDC188H7C350 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.34■□□□□ 0.53
CCDC188H7C350 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC18.34■□□□□ 0.53
CCDC188H7C350 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC188H7C350 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC188H7C350 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC188H7C350 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC188H7C350 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.34■□□□□ 0.53
CCDC188H7C350 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC188H7C350 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC188H7C350 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC188H7C350 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.34■□□□□ 0.53
CCDC188H7C350 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC188H7C350 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.34■□□□□ 0.53
CCDC188H7C350 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC188H7C350 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.34■□□□□ 0.53
CCDC188H7C350 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.34■□□□□ 0.53
CCDC188H7C350 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.34■□□□□ 0.53
CCDC188H7C350 AL139327.4-201ENST00000612362 153 ntBASIC18.34■□□□□ 0.53
CCDC188H7C350 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC188H7C350 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC188H7C350 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC188H7C350 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC188H7C350 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC18.34■□□□□ 0.53
CCDC188H7C350 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC188H7C350 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC188H7C350 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
CCDC188H7C350 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
CCDC188H7C350 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC188H7C350 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC188H7C350 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC188H7C350 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CCDC188H7C350 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.33■□□□□ 0.53
CCDC188H7C350 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC18.33■□□□□ 0.53
CCDC188H7C350 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC188H7C350 AC005915.1-201ENST00000624912 2018 ntBASIC18.33■□□□□ 0.53
CCDC188H7C350 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC188H7C350 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC188H7C350 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC188H7C350 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC188H7C350 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
CCDC188H7C350 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.33■□□□□ 0.53
CCDC188H7C350 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
CCDC188H7C350 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC188H7C350 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC188H7C350 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
CCDC188H7C350 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC18.33■□□□□ 0.53
CCDC188H7C350 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
CCDC188H7C350 PRORSD1P-201ENST00000295112 541 ntBASIC18.33■□□□□ 0.52
CCDC188H7C350 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC188H7C350 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC188H7C350 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC18.33■□□□□ 0.52
CCDC188H7C350 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.33■□□□□ 0.52
CCDC188H7C350 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.33■□□□□ 0.52
CCDC188H7C350 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
CCDC188H7C350 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.33■□□□□ 0.52
CCDC188H7C350 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.33■□□□□ 0.52
CCDC188H7C350 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.33■□□□□ 0.52
CCDC188H7C350 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms