Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
USH1CQ9Y6N9 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
USH1CQ9Y6N9 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USH1CQ9Y6N9 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.63■□□□□ 0.41
USH1CQ9Y6N9 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USH1CQ9Y6N9 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.63■□□□□ 0.41
USH1CQ9Y6N9 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.63■□□□□ 0.41
USH1CQ9Y6N9 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
USH1CQ9Y6N9 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USH1CQ9Y6N9 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 AL603756.1-201ENST00000606511 2163 ntBASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USH1CQ9Y6N9 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 ESRRAP1-201ENST00000400596 1257 ntBASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 KRT18P23-201ENST00000435622 1283 ntBASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 MFAP1P1-201ENST00000442257 1255 ntBASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USH1CQ9Y6N9 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
USH1CQ9Y6N9 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
USH1CQ9Y6N9 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USH1CQ9Y6N9 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
USH1CQ9Y6N9 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
USH1CQ9Y6N9 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
USH1CQ9Y6N9 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USH1CQ9Y6N9 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.6■□□□□ 0.41
USH1CQ9Y6N9 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.6■□□□□ 0.41
USH1CQ9Y6N9 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USH1CQ9Y6N9 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
USH1CQ9Y6N9 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USH1CQ9Y6N9 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
USH1CQ9Y6N9 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
USH1CQ9Y6N9 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USH1CQ9Y6N9 RNF121-214ENST00000533380 870 ntTSL 3 BASIC17.6■□□□□ 0.41
USH1CQ9Y6N9 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USH1CQ9Y6N9 RPS15-203ENST00000586096 570 ntTSL 2 BASIC17.6■□□□□ 0.41
USH1CQ9Y6N9 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms