Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.37
PCDHB3Q9Y5E6 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCDHB3Q9Y5E6 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.33■□□□□ 0.37
PCDHB3Q9Y5E6 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.33■□□□□ 0.37
PCDHB3Q9Y5E6 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
PCDHB3Q9Y5E6 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
PCDHB3Q9Y5E6 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCDHB3Q9Y5E6 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.33■□□□□ 0.37
PCDHB3Q9Y5E6 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 AC233702.3-201ENST00000578656 1387 ntBASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 VENTXP7-201ENST00000475503 772 ntBASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 KRT18P31-201ENST00000506277 1292 ntBASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 AC124864.1-201ENST00000623408 392 ntBASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 AP001002.2-201ENST00000625137 386 ntBASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHB3Q9Y5E6 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 AC108860.2-201ENST00000562760 2183 ntBASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 AC074051.2-201ENST00000565115 352 ntBASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 AC004263.2-201ENST00000617183 678 ntBASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHB3Q9Y5E6 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 AL160237.2-201ENST00000556165 472 ntBASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 PCDHA12-202ENST00000613593 2588 ntBASIC17.31■□□□□ 0.36
PCDHB3Q9Y5E6 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms