Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 CLN6-204ENST00000564752 900 ntTSL 3 BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 HYMAI.1-201ENST00000620949 238 ntBASIC14.32□□□□□ -0.12
FOXA2Q9Y261 CLN6-214ENST00000636314 442 ntTSL 3 BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 KRT89P-201ENST00000620027 1478 ntBASIC14.31□□□□□ -0.12
FOXA2Q9Y261 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 KRT18P48-201ENST00000434763 852 ntBASIC14.31□□□□□ -0.12
FOXA2Q9Y261 AC083849.1-201ENST00000615227 514 ntBASIC14.31□□□□□ -0.12
FOXA2Q9Y261 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 AL121956.5-201ENST00000625261 221 ntBASIC14.31□□□□□ -0.12
FOXA2Q9Y261 DFFB-212ENST00000625756 649 ntTSL 5 BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA2Q9Y261 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 AL121761.2-201ENST00000598007 1648 ntBASIC14.3□□□□□ -0.12
FOXA2Q9Y261 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 KRT18P35-201ENST00000510488 1269 ntBASIC14.3□□□□□ -0.12
FOXA2Q9Y261 VENTXP5-201ENST00000523979 775 ntBASIC14.3□□□□□ -0.12
FOXA2Q9Y261 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 LITAF-220ENST00000620789 692 ntTSL 5 BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 MED29-202ENST00000594368 1471 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 AD000864.1-201ENST00000624076 2295 ntBASIC14.3□□□□□ -0.12
FOXA2Q9Y261 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC14.3□□□□□ -0.12
FOXA2Q9Y261 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA2Q9Y261 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms