Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LRFN1Q9P244 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
LRFN1Q9P244 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
LRFN1Q9P244 PMPCAP1-201ENST00000508114 1576 ntBASIC16.21■□□□□ 0.19
LRFN1Q9P244 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
LRFN1Q9P244 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.21■□□□□ 0.19
LRFN1Q9P244 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LRFN1Q9P244 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.21■□□□□ 0.19
LRFN1Q9P244 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
LRFN1Q9P244 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LRFN1Q9P244 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LRFN1Q9P244 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LRFN1Q9P244 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC16.21■□□□□ 0.19
LRFN1Q9P244 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
LRFN1Q9P244 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
LRFN1Q9P244 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LRFN1Q9P244 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LRFN1Q9P244 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
LRFN1Q9P244 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
LRFN1Q9P244 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LRFN1Q9P244 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LRFN1Q9P244 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LRFN1Q9P244 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.21■□□□□ 0.19
LRFN1Q9P244 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.21■□□□□ 0.19
LRFN1Q9P244 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
LRFN1Q9P244 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.21■□□□□ 0.19
LRFN1Q9P244 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.21■□□□□ 0.19
LRFN1Q9P244 MTDHP4-201ENST00000600287 670 ntBASIC16.21■□□□□ 0.19
LRFN1Q9P244 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.21■□□□□ 0.19
LRFN1Q9P244 AD001527.2-201ENST00000622994 785 ntBASIC16.21■□□□□ 0.19
LRFN1Q9P244 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
LRFN1Q9P244 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.21■□□□□ 0.19
LRFN1Q9P244 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LRFN1Q9P244 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LRFN1Q9P244 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LRFN1Q9P244 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LRFN1Q9P244 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LRFN1Q9P244 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.21■□□□□ 0.19
LRFN1Q9P244 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
LRFN1Q9P244 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
LRFN1Q9P244 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.18
LRFN1Q9P244 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
LRFN1Q9P244 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
LRFN1Q9P244 SIRPAP1-201ENST00000448467 1770 ntBASIC16.21■□□□□ 0.18
LRFN1Q9P244 AC100803.2-201ENST00000562459 1963 ntBASIC16.2■□□□□ 0.18
LRFN1Q9P244 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.2■□□□□ 0.18
LRFN1Q9P244 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LRFN1Q9P244 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
LRFN1Q9P244 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.2■□□□□ 0.18
LRFN1Q9P244 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
LRFN1Q9P244 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LRFN1Q9P244 AC079776.2-201ENST00000641154 1609 ntBASIC16.2■□□□□ 0.18
LRFN1Q9P244 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LRFN1Q9P244 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LRFN1Q9P244 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LRFN1Q9P244 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LRFN1Q9P244 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
LRFN1Q9P244 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LRFN1Q9P244 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
LRFN1Q9P244 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.2■□□□□ 0.18
LRFN1Q9P244 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LRFN1Q9P244 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC16.2■□□□□ 0.18
LRFN1Q9P244 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.2■□□□□ 0.18
LRFN1Q9P244 AC025062.2-201ENST00000605477 670 ntBASIC16.2■□□□□ 0.18
LRFN1Q9P244 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.2■□□□□ 0.18
LRFN1Q9P244 AC116407.3-201ENST00000623905 1129 ntBASIC16.2■□□□□ 0.18
LRFN1Q9P244 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
LRFN1Q9P244 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
LRFN1Q9P244 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LRFN1Q9P244 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LRFN1Q9P244 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LRFN1Q9P244 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LRFN1Q9P244 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LRFN1Q9P244 HLA-J-201ENST00000462773 1622 ntBASIC16.19■□□□□ 0.18
LRFN1Q9P244 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LRFN1Q9P244 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.19■□□□□ 0.18
LRFN1Q9P244 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.19■□□□□ 0.18
LRFN1Q9P244 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LRFN1Q9P244 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LRFN1Q9P244 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LRFN1Q9P244 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.19■□□□□ 0.18
LRFN1Q9P244 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LRFN1Q9P244 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LRFN1Q9P244 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
LRFN1Q9P244 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LRFN1Q9P244 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LRFN1Q9P244 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LRFN1Q9P244 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
LRFN1Q9P244 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.19■□□□□ 0.18
LRFN1Q9P244 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LRFN1Q9P244 BX005266.1-201ENST00000473402 457 ntBASIC16.19■□□□□ 0.18
LRFN1Q9P244 SLC25A1P1-201ENST00000528351 927 ntBASIC16.19■□□□□ 0.18
LRFN1Q9P244 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.19■□□□□ 0.18
LRFN1Q9P244 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.19■□□□□ 0.18
LRFN1Q9P244 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.19■□□□□ 0.18
LRFN1Q9P244 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.19■□□□□ 0.18
LRFN1Q9P244 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.19■□□□□ 0.18
LRFN1Q9P244 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
LRFN1Q9P244 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
LRFN1Q9P244 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms