Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL20A1Q9P218 NCF1C-201ENST00000438382 1427 ntBASIC19.91■□□□□ 0.78
COL20A1Q9P218 AC012317.2-201ENST00000623305 2251 ntBASIC19.91■□□□□ 0.78
COL20A1Q9P218 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL20A1Q9P218 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL20A1Q9P218 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL20A1Q9P218 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC19.91■□□□□ 0.78
COL20A1Q9P218 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
COL20A1Q9P218 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
COL20A1Q9P218 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL20A1Q9P218 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
COL20A1Q9P218 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL20A1Q9P218 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL20A1Q9P218 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL20A1Q9P218 RPP21-221ENST00000428040 594 ntTSL 2 BASIC19.9■□□□□ 0.78
COL20A1Q9P218 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC19.9■□□□□ 0.78
COL20A1Q9P218 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC19.9■□□□□ 0.78
COL20A1Q9P218 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC19.9■□□□□ 0.78
COL20A1Q9P218 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC19.9■□□□□ 0.78
COL20A1Q9P218 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL20A1Q9P218 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC19.9■□□□□ 0.78
COL20A1Q9P218 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL20A1Q9P218 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC19.9■□□□□ 0.78
COL20A1Q9P218 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC19.9■□□□□ 0.78
COL20A1Q9P218 FAM197Y3-203ENST00000618346 717 ntBASIC19.9■□□□□ 0.78
COL20A1Q9P218 MIR1199-201ENST00000621445 119 ntBASIC19.9■□□□□ 0.78
COL20A1Q9P218 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
COL20A1Q9P218 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL20A1Q9P218 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL20A1Q9P218 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL20A1Q9P218 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL20A1Q9P218 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL20A1Q9P218 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC19.9■□□□□ 0.78
COL20A1Q9P218 AC006116.8-202ENST00000587620 1550 ntBASIC19.9■□□□□ 0.78
COL20A1Q9P218 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL20A1Q9P218 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL20A1Q9P218 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL20A1Q9P218 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
COL20A1Q9P218 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
COL20A1Q9P218 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL20A1Q9P218 AIRN-201ENST00000601203 4374 ntBASIC19.9■□□□□ 0.78
COL20A1Q9P218 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL20A1Q9P218 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
COL20A1Q9P218 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL20A1Q9P218 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.89■□□□□ 0.78
COL20A1Q9P218 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.78
COL20A1Q9P218 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL20A1Q9P218 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL20A1Q9P218 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL20A1Q9P218 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL20A1Q9P218 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL20A1Q9P218 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
COL20A1Q9P218 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL20A1Q9P218 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
COL20A1Q9P218 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC19.89■□□□□ 0.77
COL20A1Q9P218 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL20A1Q9P218 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
COL20A1Q9P218 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
COL20A1Q9P218 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC19.89■□□□□ 0.77
COL20A1Q9P218 NMU-202ENST00000505262 693 ntTSL 3 BASIC19.89■□□□□ 0.77
COL20A1Q9P218 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC19.89■□□□□ 0.77
COL20A1Q9P218 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL20A1Q9P218 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL20A1Q9P218 AC097637.2-201ENST00000624096 1997 ntBASIC19.89■□□□□ 0.77
COL20A1Q9P218 AC005593.1-201ENST00000624894 515 ntBASIC19.89■□□□□ 0.77
COL20A1Q9P218 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
COL20A1Q9P218 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC19.89■□□□□ 0.77
COL20A1Q9P218 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL20A1Q9P218 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.89■□□□□ 0.77
COL20A1Q9P218 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.77
COL20A1Q9P218 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL20A1Q9P218 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL20A1Q9P218 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL20A1Q9P218 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC19.88■□□□□ 0.77
COL20A1Q9P218 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL20A1Q9P218 AMT-250ENST00000637682 1823 ntTSL 5 BASIC19.88■□□□□ 0.77
COL20A1Q9P218 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL20A1Q9P218 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL20A1Q9P218 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL20A1Q9P218 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.88■□□□□ 0.77
COL20A1Q9P218 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC19.88■□□□□ 0.77
COL20A1Q9P218 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.88■□□□□ 0.77
COL20A1Q9P218 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL20A1Q9P218 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL20A1Q9P218 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
COL20A1Q9P218 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
COL20A1Q9P218 KRT18P3-201ENST00000451602 1288 ntBASIC19.88■□□□□ 0.77
COL20A1Q9P218 AC108751.1-201ENST00000490852 363 ntBASIC19.88■□□□□ 0.77
COL20A1Q9P218 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC19.88■□□□□ 0.77
COL20A1Q9P218 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC19.88■□□□□ 0.77
COL20A1Q9P218 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC19.88■□□□□ 0.77
COL20A1Q9P218 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.88■□□□□ 0.77
COL20A1Q9P218 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
COL20A1Q9P218 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL20A1Q9P218 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.88■□□□□ 0.77
COL20A1Q9P218 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.88■□□□□ 0.77
COL20A1Q9P218 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.88■□□□□ 0.77
COL20A1Q9P218 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL20A1Q9P218 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL20A1Q9P218 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms