Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC20.83■□□□□ 0.92
SMC1BQ8NDV3 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SMC1BQ8NDV3 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC20.82■□□□□ 0.92
SMC1BQ8NDV3 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 AC004233.3-201ENST00000607794 1269 ntBASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 SIRPAP1-201ENST00000448467 1770 ntBASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
SMC1BQ8NDV3 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 INO80E-210ENST00000567705 880 ntTSL 3 BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 AL132655.2-201ENST00000596276 594 ntBASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 AC116407.2-201ENST00000613639 860 ntBASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SMC1BQ8NDV3 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms