Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 UROS-202ENST00000368778 1556 ntTSL 2 BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 FAM87A-204ENST00000613235 858 ntBASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 AC092338.2-201ENST00000568827 1415 ntBASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 AC010203.1-204ENST00000548782 407 ntBASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 AC008622.2-201ENST00000617006 1229 ntBASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 AL031432.5-201ENST00000641059 760 ntBASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 CROCCP2-202ENST00000412962 2773 ntBASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.47■□□□□ 0.23
DEPDC4Q8N2C3 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 AC073508.3-201ENST00000619697 1419 ntBASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 ARMC10P1-201ENST00000313754 855 ntBASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 AC017007.3-201ENST00000479865 435 ntBASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 AL023803.3-201ENST00000615559 522 ntBASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
DEPDC4Q8N2C3 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.46■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms