Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
USP54Q70EL1 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC23.3■■□□□ 1.32
USP54Q70EL1 LSM12-202ENST00000585388 942 ntTSL 3 BASIC23.3■■□□□ 1.32
USP54Q70EL1 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC23.3■■□□□ 1.32
USP54Q70EL1 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC23.3■■□□□ 1.32
USP54Q70EL1 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC23.3■■□□□ 1.32
USP54Q70EL1 HNRNPRP1-201ENST00000453465 1695 ntBASIC23.3■■□□□ 1.32
USP54Q70EL1 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
USP54Q70EL1 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC23.3■■□□□ 1.32
USP54Q70EL1 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
USP54Q70EL1 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC23.29■■□□□ 1.32
USP54Q70EL1 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
USP54Q70EL1 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
USP54Q70EL1 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
USP54Q70EL1 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
USP54Q70EL1 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
USP54Q70EL1 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
USP54Q70EL1 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
USP54Q70EL1 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
USP54Q70EL1 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC23.29■■□□□ 1.32
USP54Q70EL1 AL513480.1-201ENST00000451731 511 ntBASIC23.29■■□□□ 1.32
USP54Q70EL1 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC23.29■■□□□ 1.32
USP54Q70EL1 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
USP54Q70EL1 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC23.29■■□□□ 1.32
USP54Q70EL1 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC23.29■■□□□ 1.32
USP54Q70EL1 LINC02084-201ENST00000606069 1096 ntBASIC23.29■■□□□ 1.32
USP54Q70EL1 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC23.29■■□□□ 1.32
USP54Q70EL1 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
USP54Q70EL1 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
USP54Q70EL1 AC093028.1-201ENST00000622998 982 ntBASIC23.29■■□□□ 1.32
USP54Q70EL1 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC23.29■■□□□ 1.32
USP54Q70EL1 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC23.29■■□□□ 1.32
USP54Q70EL1 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC23.29■■□□□ 1.32
USP54Q70EL1 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
USP54Q70EL1 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC23.29■■□□□ 1.32
USP54Q70EL1 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
USP54Q70EL1 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
USP54Q70EL1 AL645939.2-201ENST00000427340 991 ntBASIC23.28■■□□□ 1.32
USP54Q70EL1 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC23.28■■□□□ 1.32
USP54Q70EL1 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC23.28■■□□□ 1.32
USP54Q70EL1 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
USP54Q70EL1 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC23.28■■□□□ 1.32
USP54Q70EL1 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
USP54Q70EL1 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
USP54Q70EL1 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC23.28■■□□□ 1.32
USP54Q70EL1 REM2-202ENST00000536884 1331 ntTSL 2 BASIC23.28■■□□□ 1.32
USP54Q70EL1 AC129492.6-201ENST00000611383 1305 ntBASIC23.28■■□□□ 1.32
USP54Q70EL1 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
USP54Q70EL1 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC23.28■■□□□ 1.32
USP54Q70EL1 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC23.28■■□□□ 1.32
USP54Q70EL1 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC23.28■■□□□ 1.32
USP54Q70EL1 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC23.28■■□□□ 1.32
USP54Q70EL1 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
USP54Q70EL1 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
USP54Q70EL1 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
USP54Q70EL1 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC23.27■■□□□ 1.32
USP54Q70EL1 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
USP54Q70EL1 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
USP54Q70EL1 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
USP54Q70EL1 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC23.27■■□□□ 1.32
USP54Q70EL1 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC23.27■■□□□ 1.32
USP54Q70EL1 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
USP54Q70EL1 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
USP54Q70EL1 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC23.27■■□□□ 1.32
USP54Q70EL1 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
USP54Q70EL1 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC23.27■■□□□ 1.32
USP54Q70EL1 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
USP54Q70EL1 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
USP54Q70EL1 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC23.27■■□□□ 1.32
USP54Q70EL1 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC23.27■■□□□ 1.32
USP54Q70EL1 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC23.27■■□□□ 1.32
USP54Q70EL1 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
USP54Q70EL1 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC23.27■■□□□ 1.31
USP54Q70EL1 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
USP54Q70EL1 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
USP54Q70EL1 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
USP54Q70EL1 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
USP54Q70EL1 AL627223.1-201ENST00000416693 442 ntBASIC23.26■■□□□ 1.31
USP54Q70EL1 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC23.26■■□□□ 1.31
USP54Q70EL1 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC23.26■■□□□ 1.31
USP54Q70EL1 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC23.26■■□□□ 1.31
USP54Q70EL1 AC109322.1-201ENST00000524499 1264 ntBASIC23.26■■□□□ 1.31
USP54Q70EL1 AC093520.2-201ENST00000561830 333 ntBASIC23.26■■□□□ 1.31
USP54Q70EL1 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
USP54Q70EL1 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
USP54Q70EL1 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC23.26■■□□□ 1.31
USP54Q70EL1 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC23.26■■□□□ 1.31
USP54Q70EL1 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
USP54Q70EL1 HARS-203ENST00000431330 1774 ntTSL 2 BASIC23.26■■□□□ 1.31
USP54Q70EL1 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
USP54Q70EL1 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
USP54Q70EL1 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
USP54Q70EL1 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC23.26■■□□□ 1.31
USP54Q70EL1 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC23.26■■□□□ 1.31
USP54Q70EL1 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC23.26■■□□□ 1.31
USP54Q70EL1 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
USP54Q70EL1 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
USP54Q70EL1 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC23.25■■□□□ 1.31
USP54Q70EL1 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC23.25■■□□□ 1.31
USP54Q70EL1 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms