Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 OR6D1P-202ENST00000641007 5290 ntBASIC21.34■■□□□ 1.01
VPS53Q5VIR6 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 MEG3-211ENST00000452514 461 ntTSL 3 BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 SKP2-204ENST00000508514 821 ntTSL 3 BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
VPS53Q5VIR6 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC21.33■■□□□ 1
VPS53Q5VIR6 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
VPS53Q5VIR6 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
VPS53Q5VIR6 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
VPS53Q5VIR6 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC21.33■■□□□ 1
VPS53Q5VIR6 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
VPS53Q5VIR6 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
VPS53Q5VIR6 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
VPS53Q5VIR6 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
VPS53Q5VIR6 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
VPS53Q5VIR6 MED29-202ENST00000594368 1471 ntTSL 2 BASIC21.32■■□□□ 1
VPS53Q5VIR6 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS53Q5VIR6 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC21.32■■□□□ 1
VPS53Q5VIR6 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC21.32■■□□□ 1
VPS53Q5VIR6 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS53Q5VIR6 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS53Q5VIR6 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
VPS53Q5VIR6 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
VPS53Q5VIR6 KRT18P56-201ENST00000507275 550 ntBASIC21.32■■□□□ 1
VPS53Q5VIR6 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC21.32■■□□□ 1
VPS53Q5VIR6 PNN-202ENST00000553331 656 ntTSL 3 BASIC21.32■■□□□ 1
VPS53Q5VIR6 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC21.32■■□□□ 1
VPS53Q5VIR6 Z69720.1-201ENST00000601483 472 ntBASIC21.32■■□□□ 1
VPS53Q5VIR6 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
VPS53Q5VIR6 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC21.32■■□□□ 1
VPS53Q5VIR6 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS53Q5VIR6 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
VPS53Q5VIR6 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS53Q5VIR6 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
VPS53Q5VIR6 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC21.32■■□□□ 1
VPS53Q5VIR6 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC21.32■■□□□ 1
VPS53Q5VIR6 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC21.32■■□□□ 1
VPS53Q5VIR6 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS53Q5VIR6 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC21.32■■□□□ 1
VPS53Q5VIR6 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC21.32■■□□□ 1
VPS53Q5VIR6 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS53Q5VIR6 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS53Q5VIR6 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC21.32■■□□□ 1
VPS53Q5VIR6 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS53Q5VIR6 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC21.31■■□□□ 1
VPS53Q5VIR6 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC21.31■■□□□ 1
VPS53Q5VIR6 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC21.31■■□□□ 1
VPS53Q5VIR6 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC21.31■■□□□ 1
VPS53Q5VIR6 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
VPS53Q5VIR6 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
VPS53Q5VIR6 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC21.31■■□□□ 1
VPS53Q5VIR6 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
VPS53Q5VIR6 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VPS53Q5VIR6 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
VPS53Q5VIR6 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC21.31■■□□□ 1
VPS53Q5VIR6 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VPS53Q5VIR6 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC21.31■■□□□ 1
VPS53Q5VIR6 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC21.31■■□□□ 1
VPS53Q5VIR6 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC21.31■■□□□ 1
VPS53Q5VIR6 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC21.31■■□□□ 1
VPS53Q5VIR6 AC012615.1-201ENST00000565797 1299 ntBASIC21.31■■□□□ 1
VPS53Q5VIR6 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC21.31■■□□□ 1
VPS53Q5VIR6 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC21.31■■□□□ 1
VPS53Q5VIR6 CLEC4GP1-201ENST00000596555 870 ntBASIC21.31■■□□□ 1
VPS53Q5VIR6 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC21.31■■□□□ 1
VPS53Q5VIR6 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC21.31■■□□□ 1
VPS53Q5VIR6 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VPS53Q5VIR6 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
VPS53Q5VIR6 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
VPS53Q5VIR6 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
VPS53Q5VIR6 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms