Protein–RNA interactions for Protein: Q12766

HMGXB3, HMG domain-containing protein 3, humanhuman

Predictions only

Length 1,538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3Q12766 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC30.73■■■□□ 2.51
HMGXB3Q12766 MMP17-203ENST00000535004 719 ntTSL 3 BASIC30.73■■■□□ 2.51
HMGXB3Q12766 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
HMGXB3Q12766 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC30.73■■■□□ 2.51
HMGXB3Q12766 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC30.73■■■□□ 2.51
HMGXB3Q12766 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC30.73■■■□□ 2.51
HMGXB3Q12766 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC30.73■■■□□ 2.51
HMGXB3Q12766 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC30.73■■■□□ 2.51
HMGXB3Q12766 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC30.73■■■□□ 2.51
HMGXB3Q12766 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC30.73■■■□□ 2.51
HMGXB3Q12766 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
HMGXB3Q12766 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC30.73■■■□□ 2.51
HMGXB3Q12766 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
HMGXB3Q12766 NME2P1-201ENST00000426182 414 ntBASIC30.73■■■□□ 2.51
HMGXB3Q12766 U91328.1-201ENST00000437528 223 ntBASIC30.73■■■□□ 2.51
HMGXB3Q12766 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC30.73■■■□□ 2.51
HMGXB3Q12766 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
HMGXB3Q12766 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC30.73■■■□□ 2.51
HMGXB3Q12766 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
HMGXB3Q12766 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC30.73■■■□□ 2.51
HMGXB3Q12766 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC30.73■■■□□ 2.51
HMGXB3Q12766 AL662799.1-202ENST00000614205 422 ntBASIC30.73■■■□□ 2.51
HMGXB3Q12766 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC30.72■■■□□ 2.51
HMGXB3Q12766 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
HMGXB3Q12766 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC30.72■■■□□ 2.51
HMGXB3Q12766 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC30.72■■■□□ 2.51
HMGXB3Q12766 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC30.72■■■□□ 2.51
HMGXB3Q12766 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC30.72■■■□□ 2.51
HMGXB3Q12766 AC005332.7-201ENST00000614046 2005 ntBASIC30.72■■■□□ 2.51
HMGXB3Q12766 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
HMGXB3Q12766 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC30.72■■■□□ 2.51
HMGXB3Q12766 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
HMGXB3Q12766 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
HMGXB3Q12766 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
HMGXB3Q12766 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC30.72■■■□□ 2.51
HMGXB3Q12766 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC30.72■■■□□ 2.51
HMGXB3Q12766 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
HMGXB3Q12766 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
HMGXB3Q12766 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
HMGXB3Q12766 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC30.72■■■□□ 2.51
HMGXB3Q12766 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
HMGXB3Q12766 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
HMGXB3Q12766 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
HMGXB3Q12766 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
HMGXB3Q12766 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC30.71■■■□□ 2.51
HMGXB3Q12766 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC30.71■■■□□ 2.51
HMGXB3Q12766 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC30.71■■■□□ 2.51
HMGXB3Q12766 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC30.71■■■□□ 2.51
HMGXB3Q12766 AC009118.2-201ENST00000613275 655 ntBASIC30.71■■■□□ 2.51
HMGXB3Q12766 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC30.71■■■□□ 2.51
HMGXB3Q12766 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC30.71■■■□□ 2.51
HMGXB3Q12766 PTGES2-AS1-201ENST00000443493 2100 ntBASIC30.71■■■□□ 2.51
HMGXB3Q12766 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
HMGXB3Q12766 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
HMGXB3Q12766 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC30.7■■■□□ 2.51
HMGXB3Q12766 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC30.7■■■□□ 2.51
HMGXB3Q12766 GNAS-203ENST00000306120 1878 ntBASIC30.7■■■□□ 2.51
HMGXB3Q12766 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC30.7■■■□□ 2.51
HMGXB3Q12766 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC30.7■■■□□ 2.51
HMGXB3Q12766 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC30.7■■■□□ 2.51
HMGXB3Q12766 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
HMGXB3Q12766 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
HMGXB3Q12766 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
HMGXB3Q12766 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC30.7■■■□□ 2.51
HMGXB3Q12766 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC30.7■■■□□ 2.51
HMGXB3Q12766 AL161645.1-201ENST00000622716 1255 ntBASIC30.7■■■□□ 2.51
HMGXB3Q12766 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC30.7■■■□□ 2.5
HMGXB3Q12766 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC30.7■■■□□ 2.5
HMGXB3Q12766 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
HMGXB3Q12766 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC30.69■■■□□ 2.5
HMGXB3Q12766 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
HMGXB3Q12766 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
HMGXB3Q12766 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
HMGXB3Q12766 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
HMGXB3Q12766 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
HMGXB3Q12766 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC30.69■■■□□ 2.5
HMGXB3Q12766 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC30.69■■■□□ 2.5
HMGXB3Q12766 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
HMGXB3Q12766 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
HMGXB3Q12766 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC30.69■■■□□ 2.5
HMGXB3Q12766 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
HMGXB3Q12766 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC30.69■■■□□ 2.5
HMGXB3Q12766 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC30.69■■■□□ 2.5
HMGXB3Q12766 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC30.68■■■□□ 2.5
HMGXB3Q12766 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC30.68■■■□□ 2.5
HMGXB3Q12766 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
HMGXB3Q12766 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC30.68■■■□□ 2.5
HMGXB3Q12766 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC30.68■■■□□ 2.5
HMGXB3Q12766 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
HMGXB3Q12766 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC30.68■■■□□ 2.5
HMGXB3Q12766 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC30.68■■■□□ 2.5
HMGXB3Q12766 AC027307.3-201ENST00000594262 1100 ntBASIC30.68■■■□□ 2.5
HMGXB3Q12766 AL009183.1-201ENST00000603760 355 ntBASIC30.68■■■□□ 2.5
HMGXB3Q12766 AC116407.2-201ENST00000613639 860 ntBASIC30.68■■■□□ 2.5
HMGXB3Q12766 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
HMGXB3Q12766 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
HMGXB3Q12766 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC30.68■■■□□ 2.5
HMGXB3Q12766 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
HMGXB3Q12766 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
HMGXB3Q12766 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC30.68■■■□□ 2.5
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms