Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
IRX4P78413 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
IRX4P78413 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
IRX4P78413 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
IRX4P78413 AC233702.3-201ENST00000578656 1387 ntBASIC18.42■□□□□ 0.54
IRX4P78413 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC18.42■□□□□ 0.54
IRX4P78413 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
IRX4P78413 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
IRX4P78413 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
IRX4P78413 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
IRX4P78413 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
IRX4P78413 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
IRX4P78413 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
IRX4P78413 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
IRX4P78413 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
IRX4P78413 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
IRX4P78413 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
IRX4P78413 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
IRX4P78413 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
IRX4P78413 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
IRX4P78413 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
IRX4P78413 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.41■□□□□ 0.54
IRX4P78413 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
IRX4P78413 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.41■□□□□ 0.54
IRX4P78413 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
IRX4P78413 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.41■□□□□ 0.54
IRX4P78413 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
IRX4P78413 NME4-212ENST00000621774 904 ntTSL 3 BASIC18.41■□□□□ 0.54
IRX4P78413 AC117500.6-201ENST00000624871 588 ntBASIC18.41■□□□□ 0.54
IRX4P78413 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
IRX4P78413 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
IRX4P78413 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
IRX4P78413 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.41■□□□□ 0.54
IRX4P78413 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
IRX4P78413 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.41■□□□□ 0.54
IRX4P78413 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
IRX4P78413 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
IRX4P78413 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
IRX4P78413 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
IRX4P78413 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
IRX4P78413 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
IRX4P78413 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
IRX4P78413 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
IRX4P78413 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
IRX4P78413 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
IRX4P78413 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
IRX4P78413 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.4■□□□□ 0.54
IRX4P78413 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
IRX4P78413 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
IRX4P78413 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.4■□□□□ 0.54
IRX4P78413 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
IRX4P78413 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.4■□□□□ 0.54
IRX4P78413 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
IRX4P78413 TSPY12P-201ENST00000421279 868 ntBASIC18.4■□□□□ 0.54
IRX4P78413 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC18.4■□□□□ 0.54
IRX4P78413 AP003733.1-201ENST00000491725 852 ntBASIC18.4■□□□□ 0.54
IRX4P78413 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC18.4■□□□□ 0.54
IRX4P78413 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.4■□□□□ 0.54
IRX4P78413 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
IRX4P78413 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
IRX4P78413 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.4■□□□□ 0.54
IRX4P78413 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
IRX4P78413 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
IRX4P78413 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
IRX4P78413 AF228730.7-201ENST00000641842 219 ntBASIC18.4■□□□□ 0.54
IRX4P78413 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
IRX4P78413 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
IRX4P78413 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
IRX4P78413 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.4■□□□□ 0.54
IRX4P78413 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
IRX4P78413 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
IRX4P78413 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
IRX4P78413 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
IRX4P78413 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
IRX4P78413 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
IRX4P78413 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
IRX4P78413 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
IRX4P78413 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.4■□□□□ 0.54
IRX4P78413 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
IRX4P78413 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.39■□□□□ 0.54
IRX4P78413 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
IRX4P78413 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.39■□□□□ 0.54
IRX4P78413 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
IRX4P78413 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.54
IRX4P78413 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.39■□□□□ 0.54
IRX4P78413 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
IRX4P78413 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
IRX4P78413 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC18.39■□□□□ 0.53
IRX4P78413 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
IRX4P78413 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
IRX4P78413 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
IRX4P78413 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
IRX4P78413 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
IRX4P78413 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
IRX4P78413 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
IRX4P78413 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.39■□□□□ 0.53
IRX4P78413 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.39■□□□□ 0.53
IRX4P78413 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
IRX4P78413 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.39■□□□□ 0.53
IRX4P78413 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms