Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
LMO4P61968 AC004832.2-201ENST00000426397 482 ntBASIC14.45□□□□□ -0.1
LMO4P61968 KRT18P2-201ENST00000447938 1258 ntBASIC14.45□□□□□ -0.1
LMO4P61968 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
LMO4P61968 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC14.45□□□□□ -0.1
LMO4P61968 AL353135.1-201ENST00000606729 504 ntBASIC14.45□□□□□ -0.1
LMO4P61968 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC14.45□□□□□ -0.1
LMO4P61968 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LMO4P61968 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
LMO4P61968 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LMO4P61968 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
LMO4P61968 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LMO4P61968 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC14.45□□□□□ -0.1
LMO4P61968 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
LMO4P61968 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
LMO4P61968 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC14.45□□□□□ -0.1
LMO4P61968 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
LMO4P61968 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
LMO4P61968 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC14.44□□□□□ -0.1
LMO4P61968 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LMO4P61968 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LMO4P61968 GPR89P-201ENST00000407924 1495 ntBASIC14.44□□□□□ -0.1
LMO4P61968 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LMO4P61968 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC14.44□□□□□ -0.1
LMO4P61968 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LMO4P61968 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
LMO4P61968 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC14.44□□□□□ -0.1
LMO4P61968 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC14.44□□□□□ -0.1
LMO4P61968 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LMO4P61968 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LMO4P61968 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
LMO4P61968 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LMO4P61968 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LMO4P61968 CRYGEP-201ENST00000412192 528 ntBASIC14.44□□□□□ -0.1
LMO4P61968 AC023274.1-201ENST00000418278 595 ntBASIC14.44□□□□□ -0.1
LMO4P61968 LINC00982-205ENST00000420957 435 ntBASIC14.44□□□□□ -0.1
LMO4P61968 AC112482.1-201ENST00000492080 688 ntBASIC14.44□□□□□ -0.1
LMO4P61968 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC14.44□□□□□ -0.1
LMO4P61968 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC14.44□□□□□ -0.1
LMO4P61968 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC14.44□□□□□ -0.1
LMO4P61968 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC14.44□□□□□ -0.1
LMO4P61968 AC002347.1-201ENST00000569543 541 ntBASIC14.44□□□□□ -0.1
LMO4P61968 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC14.44□□□□□ -0.1
LMO4P61968 AC055717.3-201ENST00000622967 595 ntBASIC14.44□□□□□ -0.1
LMO4P61968 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC14.44□□□□□ -0.1
LMO4P61968 AL805961.1-202ENST00000641562 540 ntBASIC14.44□□□□□ -0.1
LMO4P61968 HLA-DQB1-201ENST00000374943 1656 ntBASIC14.44□□□□□ -0.1
LMO4P61968 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC14.44□□□□□ -0.1
LMO4P61968 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC14.44□□□□□ -0.1
LMO4P61968 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC14.44□□□□□ -0.1
LMO4P61968 ABALON-201ENST00000629058 1903 ntBASIC14.44□□□□□ -0.1
LMO4P61968 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LMO4P61968 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC14.44□□□□□ -0.1
LMO4P61968 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC14.44□□□□□ -0.1
LMO4P61968 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC14.44□□□□□ -0.1
LMO4P61968 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LMO4P61968 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LMO4P61968 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC14.44□□□□□ -0.1
LMO4P61968 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
LMO4P61968 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LMO4P61968 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC14.43□□□□□ -0.1
LMO4P61968 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC14.43□□□□□ -0.1
LMO4P61968 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMO4P61968 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMO4P61968 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMO4P61968 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMO4P61968 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMO4P61968 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMO4P61968 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMO4P61968 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
LMO4P61968 GPX1P2-201ENST00000429271 606 ntBASIC14.43□□□□□ -0.1
LMO4P61968 PRSS29P-201ENST00000440800 595 ntBASIC14.43□□□□□ -0.1
LMO4P61968 FIS1-203ENST00000442303 631 ntTSL 3 BASIC14.43□□□□□ -0.1
LMO4P61968 VN2R19P-201ENST00000442399 1052 ntBASIC14.43□□□□□ -0.1
LMO4P61968 DNAJB3-201ENST00000446806 729 ntBASIC14.43□□□□□ -0.1
LMO4P61968 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC14.43□□□□□ -0.1
LMO4P61968 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC14.43□□□□□ -0.1
LMO4P61968 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC14.43□□□□□ -0.1
LMO4P61968 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC14.43□□□□□ -0.1
LMO4P61968 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
LMO4P61968 AC010327.4-202ENST00000591484 748 ntBASIC14.43□□□□□ -0.1
LMO4P61968 HOTTIP_1.1-201ENST00000620415 57 ntBASIC14.43□□□□□ -0.1
LMO4P61968 AC004790.2-201ENST00000623588 572 ntBASIC14.43□□□□□ -0.1
LMO4P61968 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMO4P61968 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMO4P61968 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
LMO4P61968 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMO4P61968 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMO4P61968 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LMO4P61968 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LMO4P61968 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMO4P61968 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMO4P61968 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMO4P61968 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC14.43□□□□□ -0.1
LMO4P61968 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC14.42□□□□□ -0.1
LMO4P61968 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
LMO4P61968 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LMO4P61968 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LMO4P61968 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
LMO4P61968 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms