Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
PKNOX1P55347 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PKNOX1P55347 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PKNOX1P55347 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
PKNOX1P55347 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PKNOX1P55347 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.37■□□□□ 0.37
PKNOX1P55347 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PKNOX1P55347 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PKNOX1P55347 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.36■□□□□ 0.37
PKNOX1P55347 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.36■□□□□ 0.37
PKNOX1P55347 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.36■□□□□ 0.37
PKNOX1P55347 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PKNOX1P55347 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PKNOX1P55347 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
PKNOX1P55347 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.36■□□□□ 0.37
PKNOX1P55347 AL118508.1-201ENST00000613502 2345 ntBASIC17.36■□□□□ 0.37
PKNOX1P55347 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
PKNOX1P55347 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PKNOX1P55347 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PKNOX1P55347 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PKNOX1P55347 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PKNOX1P55347 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
PKNOX1P55347 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PKNOX1P55347 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.36■□□□□ 0.37
PKNOX1P55347 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PKNOX1P55347 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PKNOX1P55347 DDX43P3-201ENST00000441064 443 ntBASIC17.36■□□□□ 0.37
PKNOX1P55347 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PKNOX1P55347 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.36■□□□□ 0.37
PKNOX1P55347 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.36■□□□□ 0.37
PKNOX1P55347 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.36■□□□□ 0.37
PKNOX1P55347 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.36■□□□□ 0.37
PKNOX1P55347 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.36■□□□□ 0.37
PKNOX1P55347 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
PKNOX1P55347 AC145285.6-201ENST00000604632 637 ntBASIC17.36■□□□□ 0.37
PKNOX1P55347 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
PKNOX1P55347 LINC01451-201ENST00000623792 534 ntBASIC17.36■□□□□ 0.37
PKNOX1P55347 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
PKNOX1P55347 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PKNOX1P55347 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PKNOX1P55347 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PKNOX1P55347 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.36■□□□□ 0.37
PKNOX1P55347 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PKNOX1P55347 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
PKNOX1P55347 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PKNOX1P55347 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
PKNOX1P55347 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PKNOX1P55347 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.36■□□□□ 0.37
PKNOX1P55347 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.36■□□□□ 0.37
PKNOX1P55347 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.36■□□□□ 0.37
PKNOX1P55347 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PKNOX1P55347 HLA-J-201ENST00000462773 1622 ntBASIC17.36■□□□□ 0.37
PKNOX1P55347 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PKNOX1P55347 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
PKNOX1P55347 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.36■□□□□ 0.37
PKNOX1P55347 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
PKNOX1P55347 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.35■□□□□ 0.37
PKNOX1P55347 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
PKNOX1P55347 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PKNOX1P55347 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.35■□□□□ 0.37
PKNOX1P55347 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
PKNOX1P55347 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PKNOX1P55347 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.35■□□□□ 0.37
PKNOX1P55347 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
PKNOX1P55347 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PKNOX1P55347 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.35■□□□□ 0.37
PKNOX1P55347 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.35■□□□□ 0.37
PKNOX1P55347 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.35■□□□□ 0.37
PKNOX1P55347 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PKNOX1P55347 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
PKNOX1P55347 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
PKNOX1P55347 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.35■□□□□ 0.37
PKNOX1P55347 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.35■□□□□ 0.37
PKNOX1P55347 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.35■□□□□ 0.37
PKNOX1P55347 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
PKNOX1P55347 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.35■□□□□ 0.37
PKNOX1P55347 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
PKNOX1P55347 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PKNOX1P55347 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
PKNOX1P55347 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
PKNOX1P55347 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
PKNOX1P55347 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
PKNOX1P55347 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
PKNOX1P55347 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PKNOX1P55347 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PKNOX1P55347 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.34■□□□□ 0.37
PKNOX1P55347 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PKNOX1P55347 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PKNOX1P55347 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.34■□□□□ 0.37
PKNOX1P55347 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PKNOX1P55347 CROCCP2-202ENST00000412962 2773 ntBASIC17.34■□□□□ 0.37
PKNOX1P55347 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.34■□□□□ 0.37
PKNOX1P55347 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PKNOX1P55347 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
PKNOX1P55347 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
PKNOX1P55347 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PKNOX1P55347 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
PKNOX1P55347 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
PKNOX1P55347 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PKNOX1P55347 AC140113.3-201ENST00000605663 199 ntBASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms