Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.64■□□□□ 0.26
RFX3P48380 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
RFX3P48380 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RFX3P48380 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RFX3P48380 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFX3P48380 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFX3P48380 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RFX3P48380 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
RFX3P48380 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFX3P48380 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFX3P48380 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RFX3P48380 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.64■□□□□ 0.25
RFX3P48380 AL031133.1-201ENST00000406807 723 ntBASIC16.64■□□□□ 0.25
RFX3P48380 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFX3P48380 DAP-202ENST00000432074 1048 ntTSL 2 BASIC16.64■□□□□ 0.25
RFX3P48380 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RFX3P48380 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RFX3P48380 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.64■□□□□ 0.25
RFX3P48380 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.64■□□□□ 0.25
RFX3P48380 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.64■□□□□ 0.25
RFX3P48380 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC16.64■□□□□ 0.25
RFX3P48380 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC16.64■□□□□ 0.25
RFX3P48380 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
RFX3P48380 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFX3P48380 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RFX3P48380 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
RFX3P48380 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFX3P48380 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFX3P48380 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
RFX3P48380 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
RFX3P48380 FLJ16779-201ENST00000612722 7638 ntBASIC16.64■□□□□ 0.25
RFX3P48380 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFX3P48380 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFX3P48380 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFX3P48380 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RFX3P48380 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RFX3P48380 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
RFX3P48380 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RFX3P48380 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFX3P48380 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFX3P48380 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFX3P48380 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
RFX3P48380 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.63■□□□□ 0.25
RFX3P48380 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFX3P48380 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFX3P48380 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RFX3P48380 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFX3P48380 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
RFX3P48380 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RFX3P48380 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFX3P48380 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFX3P48380 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFX3P48380 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFX3P48380 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RFX3P48380 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFX3P48380 MIR1224-201ENST00000408193 85 ntBASIC16.63■□□□□ 0.25
RFX3P48380 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.63■□□□□ 0.25
RFX3P48380 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.63■□□□□ 0.25
RFX3P48380 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC16.63■□□□□ 0.25
RFX3P48380 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFX3P48380 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFX3P48380 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.63■□□□□ 0.25
RFX3P48380 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RFX3P48380 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RFX3P48380 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
RFX3P48380 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.63■□□□□ 0.25
RFX3P48380 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFX3P48380 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RFX3P48380 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.63■□□□□ 0.25
RFX3P48380 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RFX3P48380 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
RFX3P48380 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
RFX3P48380 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
RFX3P48380 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.62■□□□□ 0.25
RFX3P48380 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.62■□□□□ 0.25
RFX3P48380 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.62■□□□□ 0.25
RFX3P48380 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RFX3P48380 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
RFX3P48380 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RFX3P48380 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.62■□□□□ 0.25
RFX3P48380 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.62■□□□□ 0.25
RFX3P48380 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.62■□□□□ 0.25
RFX3P48380 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RFX3P48380 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
RFX3P48380 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RFX3P48380 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RFX3P48380 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
RFX3P48380 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RFX3P48380 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
RFX3P48380 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RFX3P48380 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.62■□□□□ 0.25
RFX3P48380 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC16.62■□□□□ 0.25
RFX3P48380 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.62■□□□□ 0.25
RFX3P48380 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC16.62■□□□□ 0.25
RFX3P48380 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.62■□□□□ 0.25
RFX3P48380 AC010331.1-201ENST00000611423 582 ntBASIC16.62■□□□□ 0.25
RFX3P48380 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.62■□□□□ 0.25
RFX3P48380 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RFX3P48380 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RFX3P48380 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms