Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL12P48061 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
CXCL12P48061 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL12P48061 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CXCL12P48061 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL12P48061 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CXCL12P48061 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL12P48061 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
CXCL12P48061 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL12P48061 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
CXCL12P48061 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL12P48061 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL12P48061 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL12P48061 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL12P48061 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
CXCL12P48061 FAM185BP-201ENST00000443595 716 ntBASIC17.48■□□□□ 0.39
CXCL12P48061 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.48■□□□□ 0.39
CXCL12P48061 AL513480.1-201ENST00000451731 511 ntBASIC17.48■□□□□ 0.39
CXCL12P48061 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.48■□□□□ 0.39
CXCL12P48061 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC17.48■□□□□ 0.39
CXCL12P48061 AJ011932.1-201ENST00000621707 465 ntBASIC17.48■□□□□ 0.39
CXCL12P48061 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC17.48■□□□□ 0.39
CXCL12P48061 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.48■□□□□ 0.39
CXCL12P48061 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL12P48061 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.48■□□□□ 0.39
CXCL12P48061 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL12P48061 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CXCL12P48061 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CXCL12P48061 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CXCL12P48061 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CXCL12P48061 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CXCL12P48061 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CXCL12P48061 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CXCL12P48061 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
CXCL12P48061 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.47■□□□□ 0.39
CXCL12P48061 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CXCL12P48061 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.47■□□□□ 0.39
CXCL12P48061 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CXCL12P48061 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CXCL12P48061 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CXCL12P48061 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CXCL12P48061 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
CXCL12P48061 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CXCL12P48061 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC17.47■□□□□ 0.39
CXCL12P48061 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CXCL12P48061 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
CXCL12P48061 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC17.47■□□□□ 0.39
CXCL12P48061 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
CXCL12P48061 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC17.47■□□□□ 0.39
CXCL12P48061 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.47■□□□□ 0.39
CXCL12P48061 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.47■□□□□ 0.39
CXCL12P48061 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.47■□□□□ 0.39
CXCL12P48061 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CXCL12P48061 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.47■□□□□ 0.39
CXCL12P48061 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
CXCL12P48061 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.47■□□□□ 0.39
CXCL12P48061 AC006116.8-202ENST00000587620 1550 ntBASIC17.47■□□□□ 0.39
CXCL12P48061 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CXCL12P48061 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CXCL12P48061 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CXCL12P48061 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CXCL12P48061 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CXCL12P48061 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
CXCL12P48061 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.46■□□□□ 0.39
CXCL12P48061 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CXCL12P48061 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CXCL12P48061 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.46■□□□□ 0.39
CXCL12P48061 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CXCL12P48061 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CXCL12P48061 PMS2P4-201ENST00000412466 1052 ntBASIC17.46■□□□□ 0.39
CXCL12P48061 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
CXCL12P48061 TIMM8BP1-201ENST00000452384 211 ntBASIC17.46■□□□□ 0.39
CXCL12P48061 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.46■□□□□ 0.39
CXCL12P48061 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
CXCL12P48061 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.46■□□□□ 0.39
CXCL12P48061 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.46■□□□□ 0.39
CXCL12P48061 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
CXCL12P48061 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.46■□□□□ 0.39
CXCL12P48061 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.46■□□□□ 0.39
CXCL12P48061 AC093520.2-201ENST00000561830 333 ntBASIC17.46■□□□□ 0.39
CXCL12P48061 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CXCL12P48061 AC015911.4-201ENST00000588022 1070 ntBASIC17.46■□□□□ 0.39
CXCL12P48061 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CXCL12P48061 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CXCL12P48061 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CXCL12P48061 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CXCL12P48061 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CXCL12P48061 AC092919.2-201ENST00000623631 1645 ntBASIC17.46■□□□□ 0.39
CXCL12P48061 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CXCL12P48061 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
CXCL12P48061 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CXCL12P48061 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
CXCL12P48061 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CXCL12P48061 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
CXCL12P48061 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC17.45■□□□□ 0.38
CXCL12P48061 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CXCL12P48061 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CXCL12P48061 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CXCL12P48061 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.45■□□□□ 0.38
CXCL12P48061 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms