Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
COL18A1P39060 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC23.08■■□□□ 1.29
COL18A1P39060 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC23.08■■□□□ 1.29
COL18A1P39060 SPDYE11-202ENST00000450699 704 ntBASIC23.08■■□□□ 1.29
COL18A1P39060 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
COL18A1P39060 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC23.08■■□□□ 1.29
COL18A1P39060 AC093214.1-201ENST00000511688 1107 ntBASIC23.08■■□□□ 1.29
COL18A1P39060 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC23.08■■□□□ 1.29
COL18A1P39060 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.29
COL18A1P39060 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC23.08■■□□□ 1.29
COL18A1P39060 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
COL18A1P39060 SPDYE9P-201ENST00000570642 692 ntBASIC23.08■■□□□ 1.29
COL18A1P39060 AC026120.1-201ENST00000611536 926 ntBASIC23.08■■□□□ 1.29
COL18A1P39060 SPDYE10P-202ENST00000612005 668 ntBASIC23.08■■□□□ 1.29
COL18A1P39060 SPDYE8P-202ENST00000612377 668 ntBASIC23.08■■□□□ 1.29
COL18A1P39060 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC23.08■■□□□ 1.29
COL18A1P39060 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
COL18A1P39060 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC23.08■■□□□ 1.29
COL18A1P39060 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC23.08■■□□□ 1.29
COL18A1P39060 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC23.08■■□□□ 1.28
COL18A1P39060 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
COL18A1P39060 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC23.07■■□□□ 1.28
COL18A1P39060 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
COL18A1P39060 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
COL18A1P39060 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
COL18A1P39060 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC23.07■■□□□ 1.28
COL18A1P39060 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC23.07■■□□□ 1.28
COL18A1P39060 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC23.07■■□□□ 1.28
COL18A1P39060 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC23.07■■□□□ 1.28
COL18A1P39060 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC23.07■■□□□ 1.28
COL18A1P39060 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
COL18A1P39060 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
COL18A1P39060 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL18A1P39060 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL18A1P39060 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC23.06■■□□□ 1.28
COL18A1P39060 WBP2-203ENST00000433525 928 ntTSL 2 BASIC23.06■■□□□ 1.28
COL18A1P39060 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC23.06■■□□□ 1.28
COL18A1P39060 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC23.06■■□□□ 1.28
COL18A1P39060 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC23.06■■□□□ 1.28
COL18A1P39060 AMT-250ENST00000637682 1823 ntTSL 5 BASIC23.06■■□□□ 1.28
COL18A1P39060 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC23.06■■□□□ 1.28
COL18A1P39060 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
COL18A1P39060 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC23.06■■□□□ 1.28
COL18A1P39060 AC129492.6-201ENST00000611383 1305 ntBASIC23.06■■□□□ 1.28
COL18A1P39060 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL18A1P39060 FAM58DP-201ENST00000428076 619 ntBASIC23.06■■□□□ 1.28
COL18A1P39060 PNKD-204ENST00000436005 978 ntTSL 5 BASIC23.06■■□□□ 1.28
COL18A1P39060 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
COL18A1P39060 AC067863.1-201ENST00000494933 530 ntBASIC23.06■■□□□ 1.28
COL18A1P39060 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
COL18A1P39060 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
COL18A1P39060 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL18A1P39060 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
COL18A1P39060 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC23.05■■□□□ 1.28
COL18A1P39060 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL18A1P39060 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL18A1P39060 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
COL18A1P39060 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL18A1P39060 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL18A1P39060 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC23.05■■□□□ 1.28
COL18A1P39060 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL18A1P39060 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC23.05■■□□□ 1.28
COL18A1P39060 AP000997.3-201ENST00000623333 2250 ntBASIC23.05■■□□□ 1.28
COL18A1P39060 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
COL18A1P39060 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC23.05■■□□□ 1.28
COL18A1P39060 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC23.05■■□□□ 1.28
COL18A1P39060 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC23.05■■□□□ 1.28
COL18A1P39060 NMU-203ENST00000507338 658 ntTSL 3 BASIC23.05■■□□□ 1.28
COL18A1P39060 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC23.05■■□□□ 1.28
COL18A1P39060 VPS29-207ENST00000549970 818 ntTSL 3 BASIC23.05■■□□□ 1.28
COL18A1P39060 AC025678.2-201ENST00000562061 970 ntBASIC23.05■■□□□ 1.28
COL18A1P39060 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC23.05■■□□□ 1.28
COL18A1P39060 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL18A1P39060 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC23.05■■□□□ 1.28
COL18A1P39060 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
COL18A1P39060 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC23.05■■□□□ 1.28
COL18A1P39060 WIZP1-201ENST00000531444 2299 ntBASIC23.05■■□□□ 1.28
COL18A1P39060 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC23.04■■□□□ 1.28
COL18A1P39060 AL020996.1-203ENST00000536896 2307 ntBASIC23.04■■□□□ 1.28
COL18A1P39060 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL18A1P39060 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL18A1P39060 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC23.04■■□□□ 1.28
COL18A1P39060 AC069335.1-201ENST00000489972 472 ntBASIC23.04■■□□□ 1.28
COL18A1P39060 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
COL18A1P39060 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC23.04■■□□□ 1.28
COL18A1P39060 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
COL18A1P39060 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL18A1P39060 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC23.04■■□□□ 1.28
COL18A1P39060 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL18A1P39060 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC23.04■■□□□ 1.28
COL18A1P39060 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
COL18A1P39060 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
COL18A1P39060 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
COL18A1P39060 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
COL18A1P39060 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
COL18A1P39060 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL18A1P39060 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
COL18A1P39060 MMP17-203ENST00000535004 719 ntTSL 3 BASIC23.04■■□□□ 1.28
COL18A1P39060 AC069262.1-201ENST00000539058 672 ntBASIC23.04■■□□□ 1.28
COL18A1P39060 DUX4L27-201ENST00000554796 1261 ntBASIC23.04■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms