Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.47■□□□□ 0.87
COL2A1P02458 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL2A1P02458 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC20.47■□□□□ 0.87
COL2A1P02458 BCAR1-209ENST00000546196 1340 ntBASIC20.47■□□□□ 0.87
COL2A1P02458 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.47■□□□□ 0.87
COL2A1P02458 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL2A1P02458 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL2A1P02458 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL2A1P02458 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC20.47■□□□□ 0.87
COL2A1P02458 AC087163.2-201ENST00000457299 853 ntBASIC20.47■□□□□ 0.87
COL2A1P02458 CXCL1P1-201ENST00000502804 216 ntBASIC20.47■□□□□ 0.87
COL2A1P02458 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL2A1P02458 PUS1-205ENST00000535067 838 ntTSL 3 BASIC20.47■□□□□ 0.87
COL2A1P02458 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC20.47■□□□□ 0.87
COL2A1P02458 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC20.47■□□□□ 0.87
COL2A1P02458 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
COL2A1P02458 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC20.47■□□□□ 0.87
COL2A1P02458 CITED2-204ENST00000618718 901 ntTSL 2 BASIC20.47■□□□□ 0.87
COL2A1P02458 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL2A1P02458 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC20.47■□□□□ 0.87
COL2A1P02458 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL2A1P02458 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL2A1P02458 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL2A1P02458 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC20.46■□□□□ 0.87
COL2A1P02458 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC20.46■□□□□ 0.87
COL2A1P02458 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
COL2A1P02458 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL2A1P02458 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL2A1P02458 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC20.46■□□□□ 0.87
COL2A1P02458 CFL1-202ENST00000524553 860 ntTSL 2 BASIC20.46■□□□□ 0.87
COL2A1P02458 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC20.46■□□□□ 0.87
COL2A1P02458 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC20.46■□□□□ 0.87
COL2A1P02458 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC20.46■□□□□ 0.87
COL2A1P02458 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC20.46■□□□□ 0.87
COL2A1P02458 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL2A1P02458 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.46■□□□□ 0.87
COL2A1P02458 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL2A1P02458 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.46■□□□□ 0.87
COL2A1P02458 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL2A1P02458 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL2A1P02458 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL2A1P02458 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL2A1P02458 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL2A1P02458 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL2A1P02458 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
COL2A1P02458 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL2A1P02458 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL2A1P02458 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
COL2A1P02458 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC20.46■□□□□ 0.87
COL2A1P02458 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL2A1P02458 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.45■□□□□ 0.86
COL2A1P02458 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.45■□□□□ 0.86
COL2A1P02458 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL2A1P02458 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC20.45■□□□□ 0.86
COL2A1P02458 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC20.45■□□□□ 0.86
COL2A1P02458 SMN2-210ENST00000511812 867 ntTSL 2 BASIC20.45■□□□□ 0.86
COL2A1P02458 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC20.45■□□□□ 0.86
COL2A1P02458 CFL1-212ENST00000531413 636 ntTSL 3 BASIC20.45■□□□□ 0.86
COL2A1P02458 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC20.45■□□□□ 0.86
COL2A1P02458 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC20.45■□□□□ 0.86
COL2A1P02458 ACTL9-202ENST00000612068 1252 ntBASIC20.45■□□□□ 0.86
COL2A1P02458 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL2A1P02458 PI4KAP1-204ENST00000612579 1703 ntBASIC20.45■□□□□ 0.86
COL2A1P02458 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL2A1P02458 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL2A1P02458 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL2A1P02458 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC20.45■□□□□ 0.86
COL2A1P02458 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL2A1P02458 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC20.45■□□□□ 0.86
COL2A1P02458 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL2A1P02458 AC006116.8-202ENST00000587620 1550 ntBASIC20.45■□□□□ 0.86
COL2A1P02458 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC20.45■□□□□ 0.86
COL2A1P02458 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL2A1P02458 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL2A1P02458 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
COL2A1P02458 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.45■□□□□ 0.86
COL2A1P02458 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC20.45■□□□□ 0.86
COL2A1P02458 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
COL2A1P02458 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
COL2A1P02458 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
COL2A1P02458 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
COL2A1P02458 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL2A1P02458 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC20.44■□□□□ 0.86
COL2A1P02458 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
COL2A1P02458 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL2A1P02458 CYB561-216ENST00000582297 897 ntTSL 3 BASIC20.44■□□□□ 0.86
COL2A1P02458 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC20.44■□□□□ 0.86
COL2A1P02458 AC023141.13-201ENST00000604991 943 ntBASIC20.44■□□□□ 0.86
COL2A1P02458 AC068137.2-201ENST00000605408 478 ntBASIC20.44■□□□□ 0.86
COL2A1P02458 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC20.44■□□□□ 0.86
COL2A1P02458 AC007064.4-201ENST00000637740 555 ntBASIC20.44■□□□□ 0.86
COL2A1P02458 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL2A1P02458 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC20.44■□□□□ 0.86
COL2A1P02458 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
COL2A1P02458 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL2A1P02458 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.44■□□□□ 0.86
COL2A1P02458 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL2A1P02458 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL2A1P02458 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC20.44■□□□□ 0.86
COL2A1P02458 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms