Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.7■□□□□ 0.42
SHOX2O60902 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHOX2O60902 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHOX2O60902 MAP2K4P1-201ENST00000438453 1195 ntBASIC17.7■□□□□ 0.42
SHOX2O60902 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17.7■□□□□ 0.42
SHOX2O60902 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC17.7■□□□□ 0.42
SHOX2O60902 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SHOX2O60902 MIR4758-201ENST00000577688 71 ntBASIC17.7■□□□□ 0.42
SHOX2O60902 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SHOX2O60902 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
SHOX2O60902 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC17.7■□□□□ 0.42
SHOX2O60902 HLA-B-256ENST00000639848 1089 ntBASIC17.7■□□□□ 0.42
SHOX2O60902 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SHOX2O60902 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.7■□□□□ 0.42
SHOX2O60902 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHOX2O60902 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHOX2O60902 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHOX2O60902 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHOX2O60902 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHOX2O60902 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SHOX2O60902 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
SHOX2O60902 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC17.7■□□□□ 0.42
SHOX2O60902 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17.7■□□□□ 0.42
SHOX2O60902 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHOX2O60902 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
SHOX2O60902 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.69■□□□□ 0.42
SHOX2O60902 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SHOX2O60902 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHOX2O60902 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHOX2O60902 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.69■□□□□ 0.42
SHOX2O60902 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHOX2O60902 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHOX2O60902 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17.69■□□□□ 0.42
SHOX2O60902 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.69■□□□□ 0.42
SHOX2O60902 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.69■□□□□ 0.42
SHOX2O60902 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SHOX2O60902 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHOX2O60902 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHOX2O60902 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC17.69■□□□□ 0.42
SHOX2O60902 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHOX2O60902 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHOX2O60902 NCF1B-203ENST00000435988 1254 ntBASIC17.69■□□□□ 0.42
SHOX2O60902 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC17.69■□□□□ 0.42
SHOX2O60902 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.69■□□□□ 0.42
SHOX2O60902 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHOX2O60902 RARRES2P10-201ENST00000564312 460 ntBASIC17.69■□□□□ 0.42
SHOX2O60902 CKBP1-201ENST00000565489 1086 ntBASIC17.69■□□□□ 0.42
SHOX2O60902 AL138781.1-201ENST00000566567 1274 ntBASIC17.69■□□□□ 0.42
SHOX2O60902 SOX15-203ENST00000570788 1093 ntBASIC17.69■□□□□ 0.42
SHOX2O60902 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.69■□□□□ 0.42
SHOX2O60902 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC17.69■□□□□ 0.42
SHOX2O60902 AC060766.5-201ENST00000590539 871 ntBASIC17.69■□□□□ 0.42
SHOX2O60902 KLF2-202ENST00000592003 564 ntTSL 3 BASIC17.69■□□□□ 0.42
SHOX2O60902 AC083880.1-201ENST00000608266 535 ntBASIC17.69■□□□□ 0.42
SHOX2O60902 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHOX2O60902 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHOX2O60902 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHOX2O60902 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHOX2O60902 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHOX2O60902 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHOX2O60902 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.69■□□□□ 0.42
SHOX2O60902 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHOX2O60902 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
SHOX2O60902 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC17.69■□□□□ 0.42
SHOX2O60902 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC17.69■□□□□ 0.42
SHOX2O60902 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHOX2O60902 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.69■□□□□ 0.42
SHOX2O60902 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.69■□□□□ 0.42
SHOX2O60902 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHOX2O60902 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHOX2O60902 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHOX2O60902 DBET-201ENST00000630918 3363 ntBASIC17.68■□□□□ 0.42
SHOX2O60902 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHOX2O60902 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHOX2O60902 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHOX2O60902 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHOX2O60902 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHOX2O60902 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.68■□□□□ 0.42
SHOX2O60902 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHOX2O60902 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.68■□□□□ 0.42
SHOX2O60902 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHOX2O60902 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.68■□□□□ 0.42
SHOX2O60902 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SHOX2O60902 DDX43P3-201ENST00000441064 443 ntBASIC17.68■□□□□ 0.42
SHOX2O60902 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHOX2O60902 MCCD1P1-208ENST00000445732 328 ntBASIC17.68■□□□□ 0.42
SHOX2O60902 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC17.68■□□□□ 0.42
SHOX2O60902 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.68■□□□□ 0.42
SHOX2O60902 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.68■□□□□ 0.42
SHOX2O60902 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC17.68■□□□□ 0.42
SHOX2O60902 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC17.68■□□□□ 0.42
SHOX2O60902 LINC01311-201ENST00000565162 1445 ntBASIC17.68■□□□□ 0.42
SHOX2O60902 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
SHOX2O60902 AC116407.2-201ENST00000613639 860 ntBASIC17.68■□□□□ 0.42
SHOX2O60902 PFKL-212ENST00000628044 129 ntTSL 3 BASIC17.68■□□□□ 0.42
SHOX2O60902 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHOX2O60902 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
SHOX2O60902 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHOX2O60902 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC17.68■□□□□ 0.42
SHOX2O60902 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms