Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 TP73-AS1-207ENST00000624167 988 ntBASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 AF228730.7-201ENST00000641842 219 ntBASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 AC135776.1-201ENST00000319817 2481 ntBASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TMX2-CTNND1H3BSU7 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 AC068472.1-201ENST00000474589 881 ntBASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 RNA5SP419-201ENST00000515908 135 ntBASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 KRT18P58-201ENST00000527480 1120 ntBASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 AL355877.3-201ENST00000622820 899 ntBASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 AC073592.3-201ENST00000625118 1834 ntBASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 TP73-AS1-210ENST00000637775 1455 ntBASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
TMX2-CTNND1H3BSU7 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 AC011270.2-201ENST00000624293 2550 ntBASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 HCG11-201ENST00000411553 5696 ntBASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TMX2-CTNND1H3BSU7 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms