Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC13.56□□□□□ -0.24
COL6A5A8TX70 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A5A8TX70 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC13.56□□□□□ -0.24
COL6A5A8TX70 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A5A8TX70 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
COL6A5A8TX70 FALEC-201ENST00000416894 566 ntTSL 3 BASIC13.56□□□□□ -0.24
COL6A5A8TX70 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC13.56□□□□□ -0.24
COL6A5A8TX70 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC13.56□□□□□ -0.24
COL6A5A8TX70 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC13.56□□□□□ -0.24
COL6A5A8TX70 SNX29P1-201ENST00000548357 1007 ntBASIC13.56□□□□□ -0.24
COL6A5A8TX70 THTPA-204ENST00000554970 569 ntTSL 4 BASIC13.56□□□□□ -0.24
COL6A5A8TX70 THTPA-206ENST00000556015 535 ntTSL 3 BASIC13.56□□□□□ -0.24
COL6A5A8TX70 CD7-202ENST00000578509 925 ntTSL 3 BASIC13.56□□□□□ -0.24
COL6A5A8TX70 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A5A8TX70 SNX1-214ENST00000625244 324 ntTSL 5 BASIC13.56□□□□□ -0.24
COL6A5A8TX70 AL109936.8-201ENST00000641772 604 ntBASIC13.56□□□□□ -0.24
COL6A5A8TX70 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC13.56□□□□□ -0.24
COL6A5A8TX70 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A5A8TX70 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC13.55□□□□□ -0.24
COL6A5A8TX70 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
COL6A5A8TX70 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A5A8TX70 MYCLP1-201ENST00000372451 1075 ntBASIC13.55□□□□□ -0.24
COL6A5A8TX70 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
COL6A5A8TX70 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC13.55□□□□□ -0.24
COL6A5A8TX70 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A5A8TX70 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC13.55□□□□□ -0.24
COL6A5A8TX70 MIR4453-201ENST00000584019 89 ntBASIC13.55□□□□□ -0.24
COL6A5A8TX70 MIR6727-201ENST00000620702 65 ntBASIC13.55□□□□□ -0.24
COL6A5A8TX70 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A5A8TX70 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC13.55□□□□□ -0.24
COL6A5A8TX70 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A5A8TX70 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A5A8TX70 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A5A8TX70 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC13.55□□□□□ -0.24
COL6A5A8TX70 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC13.55□□□□□ -0.24
COL6A5A8TX70 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC13.55□□□□□ -0.24
COL6A5A8TX70 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC13.55□□□□□ -0.24
COL6A5A8TX70 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC13.55□□□□□ -0.24
COL6A5A8TX70 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC13.55□□□□□ -0.24
COL6A5A8TX70 FOS-206ENST00000555347 1280 ntTSL 2 BASIC13.55□□□□□ -0.24
COL6A5A8TX70 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC13.55□□□□□ -0.24
COL6A5A8TX70 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC13.55□□□□□ -0.24
COL6A5A8TX70 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
COL6A5A8TX70 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC13.55□□□□□ -0.24
COL6A5A8TX70 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
COL6A5A8TX70 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A5A8TX70 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A5A8TX70 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC13.55□□□□□ -0.24
COL6A5A8TX70 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL6A5A8TX70 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A5A8TX70 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 AC129492.6-201ENST00000611383 1305 ntBASIC13.54□□□□□ -0.24
COL6A5A8TX70 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A5A8TX70 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 RARRES2P8-201ENST00000566335 367 ntBASIC13.54□□□□□ -0.24
COL6A5A8TX70 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 AC009407.1-201ENST00000568958 598 ntBASIC13.54□□□□□ -0.24
COL6A5A8TX70 PRR29-204ENST00000577953 565 ntTSL 4 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 AL137060.1-201ENST00000618151 2648 ntBASIC13.54□□□□□ -0.24
COL6A5A8TX70 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A5A8TX70 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A5A8TX70 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 AC007541.1-201ENST00000570282 1469 ntBASIC13.54□□□□□ -0.24
COL6A5A8TX70 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A5A8TX70 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A5A8TX70 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A5A8TX70 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A5A8TX70 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A5A8TX70 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A5A8TX70 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A5A8TX70 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 ALG1L8P-201ENST00000533887 760 ntBASIC13.54□□□□□ -0.24
COL6A5A8TX70 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 MIR4259-201ENST00000584466 101 ntBASIC13.54□□□□□ -0.24
COL6A5A8TX70 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A5A8TX70 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A5A8TX70 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC13.54□□□□□ -0.24
COL6A5A8TX70 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A5A8TX70 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL6A5A8TX70 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms