Protein–RNA interactions for Protein: A0A087WT01

TRAV27, T-cell receptor alpha variable 27 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV27A0A087WT01 AD000864.1-201ENST00000624076 2295 ntBASIC16.05■□□□□ 0.16
TRAV27A0A087WT01 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 BX664615.1-201ENST00000443558 458 ntBASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 AC112698.1-201ENST00000510299 916 ntBASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 AC012306.2-201ENST00000609350 630 ntBASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 AC073912.3-201ENST00000624414 853 ntBASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV27A0A087WT01 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 IGHGP-201ENST00000390555 1178 ntBASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 KRT18P57-201ENST00000443599 1254 ntBASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 ZNF444P1-201ENST00000559497 298 ntBASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 AC097493.4-201ENST00000641197 219 ntBASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
TRAV27A0A087WT01 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV27A0A087WT01 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV27A0A087WT01 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.02■□□□□ 0.16
TRAV27A0A087WT01 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV27A0A087WT01 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
TRAV27A0A087WT01 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV27A0A087WT01 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRAV27A0A087WT01 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms