Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 HLA-F-220ENST00000434407 884 ntBASIC14.34□□□□□ -0.11
FOXA2Q9Y261 DDX43P3-201ENST00000441064 443 ntBASIC14.34□□□□□ -0.11
FOXA2Q9Y261 AC092597.1-201ENST00000487352 616 ntBASIC14.34□□□□□ -0.11
FOXA2Q9Y261 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 SPEG-225ENST00000617028 815 ntTSL 5 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 AC079602.3-201ENST00000623931 403 ntBASIC14.34□□□□□ -0.11
FOXA2Q9Y261 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 AC009053.2-201ENST00000563701 2365 ntBASIC14.34□□□□□ -0.11
FOXA2Q9Y261 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
FOXA2Q9Y261 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
FOXA2Q9Y261 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
FOXA2Q9Y261 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
FOXA2Q9Y261 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
FOXA2Q9Y261 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
FOXA2Q9Y261 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
FOXA2Q9Y261 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 LY6E-213ENST00000522528 606 ntTSL 3 BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 ZNF444P1-201ENST00000559497 298 ntBASIC14.33□□□□□ -0.12
FOXA2Q9Y261 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 AC024563.2-201ENST00000603282 481 ntBASIC14.33□□□□□ -0.12
FOXA2Q9Y261 AC010331.1-201ENST00000611423 582 ntBASIC14.33□□□□□ -0.12
FOXA2Q9Y261 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 AP001094.4-201ENST00000579008 2176 ntBASIC14.33□□□□□ -0.12
FOXA2Q9Y261 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 CROCCP2-202ENST00000412962 2773 ntBASIC14.33□□□□□ -0.12
FOXA2Q9Y261 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC14.33□□□□□ -0.12
FOXA2Q9Y261 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 AC080080.1-201ENST00000625121 2420 ntBASIC14.32□□□□□ -0.12
FOXA2Q9Y261 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 AC009949.1-201ENST00000623048 1830 ntBASIC14.32□□□□□ -0.12
FOXA2Q9Y261 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 KRT18P65-201ENST00000439811 1286 ntBASIC14.32□□□□□ -0.12
FOXA2Q9Y261 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC14.32□□□□□ -0.12
FOXA2Q9Y261 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms