Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
AP4E1Q9UPM8 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 LINC00265-3P-201ENST00000447588 903 ntBASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 MIR3180-1-201ENST00000580374 94 ntBASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 MIR3180-3-201ENST00000584616 94 ntBASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 NPAP1P7-201ENST00000613027 823 ntBASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
AP4E1Q9UPM8 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 LTB4R2-202ENST00000528054 3092 ntBASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 COX5BP2-201ENST00000392354 334 ntBASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 AC005104.2-201ENST00000427818 678 ntBASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 Z69720.1-201ENST00000601483 472 ntBASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.35■□□□□ 0.53
AP4E1Q9UPM8 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 PP12613-201ENST00000424958 2230 ntBASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 OR6D1P-202ENST00000641007 5290 ntBASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 ATP5G2P1-201ENST00000433580 426 ntBASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 AC093458.2-201ENST00000623150 629 ntBASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms