Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 MMP23A-201ENST00000234610 1017 ntBASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 BX088651.1-201ENST00000540551 451 ntBASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 C2orf69P3-201ENST00000565542 1120 ntBASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 KRT8P9-201ENST00000558927 1449 ntBASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SMARCAL1Q9NZC9 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
SMARCAL1Q9NZC9 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
SMARCAL1Q9NZC9 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
SMARCAL1Q9NZC9 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
SMARCAL1Q9NZC9 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMARCAL1Q9NZC9 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMARCAL1Q9NZC9 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMARCAL1Q9NZC9 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.64■□□□□ 0.57
SMARCAL1Q9NZC9 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SMARCAL1Q9NZC9 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SMARCAL1Q9NZC9 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SMARCAL1Q9NZC9 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMARCAL1Q9NZC9 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMARCAL1Q9NZC9 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMARCAL1Q9NZC9 AC022898.2-201ENST00000616822 1312 ntBASIC18.64■□□□□ 0.57
SMARCAL1Q9NZC9 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMARCAL1Q9NZC9 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC18.64■□□□□ 0.57
SMARCAL1Q9NZC9 OR6D1P-202ENST00000641007 5290 ntBASIC18.64■□□□□ 0.57
SMARCAL1Q9NZC9 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMARCAL1Q9NZC9 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMARCAL1Q9NZC9 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SMARCAL1Q9NZC9 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC18.64■□□□□ 0.57
SMARCAL1Q9NZC9 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.63■□□□□ 0.57
SMARCAL1Q9NZC9 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 AC005915.1-201ENST00000624912 2018 ntBASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms