Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HPS4Q9NQG7 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HPS4Q9NQG7 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HPS4Q9NQG7 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.29■□□□□ 0.52
HPS4Q9NQG7 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
HPS4Q9NQG7 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HPS4Q9NQG7 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.29■□□□□ 0.52
HPS4Q9NQG7 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HPS4Q9NQG7 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.29■□□□□ 0.52
HPS4Q9NQG7 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.29■□□□□ 0.52
HPS4Q9NQG7 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HPS4Q9NQG7 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
HPS4Q9NQG7 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.29■□□□□ 0.52
HPS4Q9NQG7 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HPS4Q9NQG7 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HPS4Q9NQG7 PHGDH-209ENST00000641074 1780 ntBASIC18.29■□□□□ 0.52
HPS4Q9NQG7 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HPS4Q9NQG7 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HPS4Q9NQG7 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HPS4Q9NQG7 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HPS4Q9NQG7 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HPS4Q9NQG7 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.29■□□□□ 0.52
HPS4Q9NQG7 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HPS4Q9NQG7 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 LAGE3P1-201ENST00000425356 484 ntBASIC18.28■□□□□ 0.52
HPS4Q9NQG7 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 AC122714.2-201ENST00000502787 707 ntBASIC18.28■□□□□ 0.52
HPS4Q9NQG7 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 UNC93B6-202ENST00000528242 690 ntBASIC18.28■□□□□ 0.52
HPS4Q9NQG7 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 AD001527.2-201ENST00000622994 785 ntBASIC18.28■□□□□ 0.52
HPS4Q9NQG7 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
HPS4Q9NQG7 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 AC104581.1-202ENST00000635932 2618 ntBASIC18.27■□□□□ 0.52
HPS4Q9NQG7 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 AC073592.4-201ENST00000623827 446 ntBASIC18.27■□□□□ 0.52
HPS4Q9NQG7 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HPS4Q9NQG7 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.27■□□□□ 0.51
HPS4Q9NQG7 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
HPS4Q9NQG7 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HPS4Q9NQG7 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HPS4Q9NQG7 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.27■□□□□ 0.51
HPS4Q9NQG7 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HPS4Q9NQG7 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HPS4Q9NQG7 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
HPS4Q9NQG7 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HPS4Q9NQG7 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
HPS4Q9NQG7 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
HPS4Q9NQG7 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
HPS4Q9NQG7 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.26■□□□□ 0.51
HPS4Q9NQG7 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HPS4Q9NQG7 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms