Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF41Q9H4P4 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC20.86■□□□□ 0.93
RNF41Q9H4P4 IGHV3-52-201ENST00000519770 353 ntBASIC20.86■□□□□ 0.93
RNF41Q9H4P4 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
RNF41Q9H4P4 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC20.86■□□□□ 0.93
RNF41Q9H4P4 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC20.86■□□□□ 0.93
RNF41Q9H4P4 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RNF41Q9H4P4 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC20.86■□□□□ 0.93
RNF41Q9H4P4 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC20.86■□□□□ 0.93
RNF41Q9H4P4 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF41Q9H4P4 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 SOD2-201ENST00000337404 991 ntTSL 2 BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 MYCLP1-201ENST00000372451 1075 ntBASIC20.85■□□□□ 0.93
RNF41Q9H4P4 RBM17P3-201ENST00000417687 1192 ntBASIC20.85■□□□□ 0.93
RNF41Q9H4P4 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 SAPCD2P3-201ENST00000455031 850 ntBASIC20.85■□□□□ 0.93
RNF41Q9H4P4 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 PP7080-204ENST00000510714 601 ntTSL 3 BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 AC106795.1-205ENST00000512851 1056 ntBASIC20.85■□□□□ 0.93
RNF41Q9H4P4 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 AC109462.3-201ENST00000573934 613 ntBASIC20.85■□□□□ 0.93
RNF41Q9H4P4 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 IRF5-214ENST00000613821 595 ntTSL 5 BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 AP000867.4-201ENST00000641616 219 ntBASIC20.85■□□□□ 0.93
RNF41Q9H4P4 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 AL353593.2-201ENST00000602529 1483 ntBASIC20.85■□□□□ 0.93
RNF41Q9H4P4 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF41Q9H4P4 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 GNE-204ENST00000539208 2190 ntTSL 2 BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 AC018470.1-201ENST00000624790 3129 ntBASIC20.84■□□□□ 0.93
RNF41Q9H4P4 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 HR-201ENST00000312841 5351 ntTSL 5 BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 AC134043.2-201ENST00000624206 2238 ntBASIC20.84■□□□□ 0.93
RNF41Q9H4P4 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC20.84■□□□□ 0.93
RNF41Q9H4P4 LINC00304-203ENST00000565008 1864 ntBASIC20.84■□□□□ 0.93
RNF41Q9H4P4 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNF41Q9H4P4 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNF41Q9H4P4 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
RNF41Q9H4P4 RNF165-205ENST00000588679 2904 ntBASIC20.83■□□□□ 0.93
RNF41Q9H4P4 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNF41Q9H4P4 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNF41Q9H4P4 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
RNF41Q9H4P4 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNF41Q9H4P4 AKR1C7P-201ENST00000305623 895 ntBASIC20.83■□□□□ 0.93
RNF41Q9H4P4 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNF41Q9H4P4 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
RNF41Q9H4P4 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC20.83■□□□□ 0.93
RNF41Q9H4P4 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RNF41Q9H4P4 AP001269.4-201ENST00000609611 512 ntBASIC20.83■□□□□ 0.93
RNF41Q9H4P4 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RNF41Q9H4P4 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC20.83■□□□□ 0.93
RNF41Q9H4P4 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RNF41Q9H4P4 KRT8P10-201ENST00000450021 1447 ntBASIC20.83■□□□□ 0.93
RNF41Q9H4P4 AP005117.1-201ENST00000584346 1413 ntBASIC20.83■□□□□ 0.93
RNF41Q9H4P4 PMPCAP1-201ENST00000508114 1576 ntBASIC20.83■□□□□ 0.92
RNF41Q9H4P4 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
RNF41Q9H4P4 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
RNF41Q9H4P4 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
RNF41Q9H4P4 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
RNF41Q9H4P4 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.83■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms