Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
NKX3-1Q99801 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
NKX3-1Q99801 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 SEC1P-202ENST00000473944 940 ntBASIC15.47■□□□□ 0.07
NKX3-1Q99801 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC15.47■□□□□ 0.07
NKX3-1Q99801 KRT8P7-201ENST00000533003 1432 ntBASIC15.47■□□□□ 0.07
NKX3-1Q99801 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC15.47■□□□□ 0.07
NKX3-1Q99801 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
NKX3-1Q99801 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC15.47■□□□□ 0.07
NKX3-1Q99801 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
NKX3-1Q99801 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
NKX3-1Q99801 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC15.47■□□□□ 0.07
NKX3-1Q99801 AC009949.1-201ENST00000623048 1830 ntBASIC15.47■□□□□ 0.07
NKX3-1Q99801 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
NKX3-1Q99801 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC15.46■□□□□ 0.07
NKX3-1Q99801 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
NKX3-1Q99801 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC15.46■□□□□ 0.07
NKX3-1Q99801 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
NKX3-1Q99801 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.07
NKX3-1Q99801 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
NKX3-1Q99801 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC15.46■□□□□ 0.07
NKX3-1Q99801 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
NKX3-1Q99801 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC15.46■□□□□ 0.07
NKX3-1Q99801 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
NKX3-1Q99801 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
NKX3-1Q99801 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
NKX3-1Q99801 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
NKX3-1Q99801 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC15.46■□□□□ 0.07
NKX3-1Q99801 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
NKX3-1Q99801 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
NKX3-1Q99801 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
NKX3-1Q99801 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
NKX3-1Q99801 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC15.46■□□□□ 0.07
NKX3-1Q99801 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC15.46■□□□□ 0.07
NKX3-1Q99801 AC009947.2-201ENST00000444014 672 ntBASIC15.46■□□□□ 0.07
NKX3-1Q99801 CCR12P-201ENST00000446203 998 ntBASIC15.46■□□□□ 0.07
NKX3-1Q99801 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
NKX3-1Q99801 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
NKX3-1Q99801 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC15.46■□□□□ 0.07
NKX3-1Q99801 FITM1-202ENST00000559294 800 ntBASIC15.46■□□□□ 0.07
NKX3-1Q99801 ETFA-216ENST00000560726 942 ntTSL 3 BASIC15.46■□□□□ 0.07
NKX3-1Q99801 NT5C-210ENST00000582160 860 ntTSL 2 BASIC15.46■□□□□ 0.07
NKX3-1Q99801 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC15.46■□□□□ 0.07
NKX3-1Q99801 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
NKX3-1Q99801 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC15.46■□□□□ 0.07
NKX3-1Q99801 OR6D1P-203ENST00000641209 4860 ntBASIC15.46■□□□□ 0.07
NKX3-1Q99801 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
NKX3-1Q99801 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
NKX3-1Q99801 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
NKX3-1Q99801 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.06
NKX3-1Q99801 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
NKX3-1Q99801 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.06
NKX3-1Q99801 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC15.46■□□□□ 0.06
NKX3-1Q99801 CYP2D8P-201ENST00000433633 1490 ntBASIC15.46■□□□□ 0.06
NKX3-1Q99801 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
NKX3-1Q99801 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
NKX3-1Q99801 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
NKX3-1Q99801 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NKX3-1Q99801 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NKX3-1Q99801 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
NKX3-1Q99801 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
NKX3-1Q99801 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NKX3-1Q99801 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NKX3-1Q99801 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
NKX3-1Q99801 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
NKX3-1Q99801 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NKX3-1Q99801 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 KIRREL3-AS3-201ENST00000404882 831 ntBASIC15.45■□□□□ 0.06
NKX3-1Q99801 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
NKX3-1Q99801 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC15.45■□□□□ 0.06
NKX3-1Q99801 NAPSB-206ENST00000562112 1266 ntBASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms