Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AL133373.2-201ENST00000623187 2828 ntBASIC20.7■□□□□ 0.9
NUP88Q99567 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NUP88Q99567 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NUP88Q99567 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NUP88Q99567 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
NUP88Q99567 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NUP88Q99567 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
NUP88Q99567 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC20.7■□□□□ 0.9
NUP88Q99567 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NUP88Q99567 TLE1-202ENST00000376484 666 ntTSL 3 BASIC20.7■□□□□ 0.9
NUP88Q99567 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC20.7■□□□□ 0.9
NUP88Q99567 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC20.7■□□□□ 0.9
NUP88Q99567 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC20.7■□□□□ 0.9
NUP88Q99567 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC20.7■□□□□ 0.9
NUP88Q99567 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC20.7■□□□□ 0.9
NUP88Q99567 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC20.7■□□□□ 0.9
NUP88Q99567 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NUP88Q99567 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
NUP88Q99567 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NUP88Q99567 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC20.7■□□□□ 0.9
NUP88Q99567 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NUP88Q99567 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.7■□□□□ 0.9
NUP88Q99567 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.7■□□□□ 0.9
NUP88Q99567 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NUP88Q99567 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
NUP88Q99567 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NUP88Q99567 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NUP88Q99567 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NUP88Q99567 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NUP88Q99567 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NUP88Q99567 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
NUP88Q99567 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NUP88Q99567 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NUP88Q99567 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NUP88Q99567 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NUP88Q99567 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
NUP88Q99567 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
NUP88Q99567 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
NUP88Q99567 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
NUP88Q99567 AC096633.1-201ENST00000422446 749 ntBASIC20.69■□□□□ 0.9
NUP88Q99567 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
NUP88Q99567 RPS2P1-201ENST00000434010 821 ntBASIC20.69■□□□□ 0.9
NUP88Q99567 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
NUP88Q99567 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
NUP88Q99567 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC20.69■□□□□ 0.9
NUP88Q99567 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC20.69■□□□□ 0.9
NUP88Q99567 DUTP2-201ENST00000519164 463 ntBASIC20.69■□□□□ 0.9
NUP88Q99567 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC20.69■□□□□ 0.9
NUP88Q99567 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
NUP88Q99567 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
NUP88Q99567 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC20.69■□□□□ 0.9
NUP88Q99567 AC097374.2-201ENST00000618617 1306 ntBASIC20.69■□□□□ 0.9
NUP88Q99567 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NUP88Q99567 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NUP88Q99567 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NUP88Q99567 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.69■□□□□ 0.9
NUP88Q99567 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NUP88Q99567 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
NUP88Q99567 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
NUP88Q99567 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NUP88Q99567 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
NUP88Q99567 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NUP88Q99567 REXO1L9P-201ENST00000604264 2108 ntBASIC20.68■□□□□ 0.9
NUP88Q99567 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
NUP88Q99567 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NUP88Q99567 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
NUP88Q99567 CTNS-203ENST00000399306 803 ntTSL 3 BASIC20.68■□□□□ 0.9
NUP88Q99567 SCARNA2-201ENST00000458748 420 ntBASIC20.68■□□□□ 0.9
NUP88Q99567 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC20.68■□□□□ 0.9
NUP88Q99567 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
NUP88Q99567 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC20.68■□□□□ 0.9
NUP88Q99567 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC20.68■□□□□ 0.9
NUP88Q99567 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
NUP88Q99567 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC20.68■□□□□ 0.9
NUP88Q99567 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
NUP88Q99567 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NUP88Q99567 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.68■□□□□ 0.9
NUP88Q99567 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NUP88Q99567 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC20.68■□□□□ 0.9
NUP88Q99567 AL356309.3-201ENST00000624132 1934 ntBASIC20.68■□□□□ 0.9
NUP88Q99567 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
NUP88Q99567 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
NUP88Q99567 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NUP88Q99567 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NUP88Q99567 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20.68■□□□□ 0.9
NUP88Q99567 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.68■□□□□ 0.9
NUP88Q99567 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.68■□□□□ 0.9
NUP88Q99567 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
NUP88Q99567 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
NUP88Q99567 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NUP88Q99567 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NUP88Q99567 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
NUP88Q99567 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NUP88Q99567 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC20.67■□□□□ 0.9
NUP88Q99567 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
NUP88Q99567 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NUP88Q99567 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NUP88Q99567 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
NUP88Q99567 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC20.67■□□□□ 0.9
NUP88Q99567 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms