Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SYNGAP1Q96PV0 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SYNGAP1Q96PV0 AL096828.2-201ENST00000567259 1965 ntBASIC20.06■□□□□ 0.8
SYNGAP1Q96PV0 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC20.06■□□□□ 0.8
SYNGAP1Q96PV0 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SYNGAP1Q96PV0 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
SYNGAP1Q96PV0 AC004817.3-201ENST00000602957 2129 ntBASIC20.06■□□□□ 0.8
SYNGAP1Q96PV0 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SYNGAP1Q96PV0 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SYNGAP1Q96PV0 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SYNGAP1Q96PV0 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
SYNGAP1Q96PV0 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SYNGAP1Q96PV0 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC20.06■□□□□ 0.8
SYNGAP1Q96PV0 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SYNGAP1Q96PV0 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 AC004967.1-201ENST00000453589 447 ntBASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 AC108751.1-201ENST00000490852 363 ntBASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 AL353593.2-201ENST00000602529 1483 ntBASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC20.05■□□□□ 0.8
SYNGAP1Q96PV0 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 SLC4A1APP2-201ENST00000424054 1259 ntBASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 HNRNPA1P28-201ENST00000424481 961 ntBASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 AC064836.3-201ENST00000607928 673 ntBASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 AC079781.4-201ENST00000641908 219 ntBASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 AC135776.1-201ENST00000319817 2481 ntBASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC20.04■□□□□ 0.8
SYNGAP1Q96PV0 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SYNGAP1Q96PV0 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SYNGAP1Q96PV0 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SYNGAP1Q96PV0 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.03■□□□□ 0.8
SYNGAP1Q96PV0 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC20.03■□□□□ 0.8
SYNGAP1Q96PV0 GGCT-205ENST00000409436 954 ntTSL 3 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms