Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 AC098818.2-201ENST00000564925 2320 ntBASIC17.69■□□□□ 0.42
HMGB4Q8WW32 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 AC108073.2-201ENST00000464002 357 ntBASIC17.69■□□□□ 0.42
HMGB4Q8WW32 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 AC018845.2-201ENST00000568326 409 ntBASIC17.69■□□□□ 0.42
HMGB4Q8WW32 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 AL096828.2-201ENST00000567259 1965 ntBASIC17.69■□□□□ 0.42
HMGB4Q8WW32 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 HTR7P1-202ENST00000624664 4411 ntBASIC17.69■□□□□ 0.42
HMGB4Q8WW32 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB4Q8WW32 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 SIGLEC30P-201ENST00000455569 941 ntBASIC17.68■□□□□ 0.42
HMGB4Q8WW32 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 AC005829.1-201ENST00000570002 483 ntBASIC17.68■□□□□ 0.42
HMGB4Q8WW32 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 CROCCP3-202ENST00000420820 1947 ntBASIC17.68■□□□□ 0.42
HMGB4Q8WW32 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB4Q8WW32 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 AC003669.1-201ENST00000334569 611 ntBASIC17.67■□□□□ 0.42
HMGB4Q8WW32 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 MCCD1P2-201ENST00000423228 335 ntBASIC17.67■□□□□ 0.42
HMGB4Q8WW32 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 AC092865.6-201ENST00000642101 219 ntBASIC17.67■□□□□ 0.42
HMGB4Q8WW32 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGB4Q8WW32 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HMGB4Q8WW32 AC002310.6-201ENST00000624451 1377 ntBASIC17.66■□□□□ 0.42
HMGB4Q8WW32 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HMGB4Q8WW32 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms