Protein–RNA interactions for Protein: Q8TER0

SNED1, Sushi, nidogen and EGF-like domain-containing protein 1, humanhuman

Predictions only

Length 1,413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1Q8TER0 PTMS-202ENST00000389462 773 ntTSL 2 BASIC21.36■■□□□ 1.01
SNED1Q8TER0 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC21.36■■□□□ 1.01
SNED1Q8TER0 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC21.36■■□□□ 1.01
SNED1Q8TER0 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SNED1Q8TER0 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC21.36■■□□□ 1.01
SNED1Q8TER0 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SNED1Q8TER0 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SNED1Q8TER0 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SNED1Q8TER0 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SNED1Q8TER0 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.35■■□□□ 1.01
SNED1Q8TER0 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.35■■□□□ 1.01
SNED1Q8TER0 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
SNED1Q8TER0 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SNED1Q8TER0 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
SNED1Q8TER0 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SNED1Q8TER0 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SNED1Q8TER0 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SNED1Q8TER0 DDT-204ENST00000404092 805 ntTSL 3 BASIC21.35■■□□□ 1.01
SNED1Q8TER0 DDX43P3-201ENST00000441064 443 ntBASIC21.35■■□□□ 1.01
SNED1Q8TER0 SLBP-205ENST00000488267 987 ntTSL 2 BASIC21.35■■□□□ 1.01
SNED1Q8TER0 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SNED1Q8TER0 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC21.35■■□□□ 1.01
SNED1Q8TER0 INO80C-206ENST00000586489 594 ntTSL 3 BASIC21.35■■□□□ 1.01
SNED1Q8TER0 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SNED1Q8TER0 AC099522.2-201ENST00000607001 744 ntBASIC21.35■■□□□ 1.01
SNED1Q8TER0 AC007064.4-201ENST00000637740 555 ntBASIC21.35■■□□□ 1.01
SNED1Q8TER0 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SNED1Q8TER0 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SNED1Q8TER0 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
SNED1Q8TER0 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SNED1Q8TER0 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SNED1Q8TER0 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SNED1Q8TER0 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SNED1Q8TER0 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SNED1Q8TER0 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SNED1Q8TER0 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC21.34■■□□□ 1.01
SNED1Q8TER0 CD99-202ENST00000381180 530 ntTSL 2 BASIC21.34■■□□□ 1.01
SNED1Q8TER0 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SNED1Q8TER0 ACTG1P4-201ENST00000425123 1122 ntBASIC21.34■■□□□ 1.01
SNED1Q8TER0 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SNED1Q8TER0 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC21.34■■□□□ 1.01
SNED1Q8TER0 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC21.34■■□□□ 1.01
SNED1Q8TER0 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
SNED1Q8TER0 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC21.34■■□□□ 1.01
SNED1Q8TER0 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC21.34■■□□□ 1.01
SNED1Q8TER0 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SNED1Q8TER0 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SNED1Q8TER0 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SNED1Q8TER0 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
SNED1Q8TER0 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SNED1Q8TER0 EFTUD1P1-204ENST00000560401 1798 ntBASIC21.34■■□□□ 1.01
SNED1Q8TER0 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC21.34■■□□□ 1.01
SNED1Q8TER0 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SNED1Q8TER0 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SNED1Q8TER0 WIZP1-201ENST00000531444 2299 ntBASIC21.34■■□□□ 1.01
SNED1Q8TER0 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SNED1Q8TER0 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
SNED1Q8TER0 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC21.33■■□□□ 1.01
SNED1Q8TER0 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SNED1Q8TER0 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SNED1Q8TER0 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC21.33■■□□□ 1.01
SNED1Q8TER0 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC21.33■■□□□ 1.01
SNED1Q8TER0 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC21.33■■□□□ 1.01
SNED1Q8TER0 PNKD-204ENST00000436005 978 ntTSL 5 BASIC21.33■■□□□ 1.01
SNED1Q8TER0 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC21.33■■□□□ 1.01
SNED1Q8TER0 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SNED1Q8TER0 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SNED1Q8TER0 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
SNED1Q8TER0 REM2-202ENST00000536884 1331 ntTSL 2 BASIC21.33■■□□□ 1
SNED1Q8TER0 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC21.33■■□□□ 1
SNED1Q8TER0 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SNED1Q8TER0 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC21.32■■□□□ 1
SNED1Q8TER0 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC21.32■■□□□ 1
SNED1Q8TER0 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC21.32■■□□□ 1
SNED1Q8TER0 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC21.32■■□□□ 1
SNED1Q8TER0 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC21.32■■□□□ 1
SNED1Q8TER0 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SNED1Q8TER0 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
SNED1Q8TER0 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC21.32■■□□□ 1
SNED1Q8TER0 AL627223.1-201ENST00000416693 442 ntBASIC21.32■■□□□ 1
SNED1Q8TER0 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC21.32■■□□□ 1
SNED1Q8TER0 AC002558.1-201ENST00000488906 803 ntBASIC21.32■■□□□ 1
SNED1Q8TER0 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
SNED1Q8TER0 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
SNED1Q8TER0 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC21.32■■□□□ 1
SNED1Q8TER0 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC21.32■■□□□ 1
SNED1Q8TER0 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC21.32■■□□□ 1
SNED1Q8TER0 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SNED1Q8TER0 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC21.32■■□□□ 1
SNED1Q8TER0 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SNED1Q8TER0 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC21.32■■□□□ 1
SNED1Q8TER0 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
SNED1Q8TER0 USP49-202ENST00000373010 2446 ntTSL 5 BASIC21.32■■□□□ 1
SNED1Q8TER0 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
SNED1Q8TER0 AL096828.2-201ENST00000567259 1965 ntBASIC21.32■■□□□ 1
SNED1Q8TER0 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC21.32■■□□□ 1
SNED1Q8TER0 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
SNED1Q8TER0 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC21.32■■□□□ 1
SNED1Q8TER0 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.32■■□□□ 1
SNED1Q8TER0 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms