Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.86■□□□□ 0.93
SMC1BQ8NDV3 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SMC1BQ8NDV3 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMC1BQ8NDV3 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMC1BQ8NDV3 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SMC1BQ8NDV3 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMC1BQ8NDV3 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SMC1BQ8NDV3 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SMC1BQ8NDV3 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMC1BQ8NDV3 PARP8-218ENST00000513738 596 ntTSL 4 BASIC20.86■□□□□ 0.93
SMC1BQ8NDV3 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC20.86■□□□□ 0.93
SMC1BQ8NDV3 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC20.86■□□□□ 0.93
SMC1BQ8NDV3 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMC1BQ8NDV3 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SMC1BQ8NDV3 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC20.86■□□□□ 0.93
SMC1BQ8NDV3 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMC1BQ8NDV3 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMC1BQ8NDV3 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 TDG-209ENST00000544861 1387 ntTSL 2 BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 RPS2P32-201ENST00000439199 892 ntBASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 HILS1-202ENST00000545329 423 ntBASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMC1BQ8NDV3 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 AC141586.3-201ENST00000562166 1838 ntBASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 SPDYE7P-202ENST00000420373 878 ntBASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 AC097493.3-201ENST00000509725 367 ntBASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 AC069120.2-201ENST00000524091 540 ntBASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 RPL28-209ENST00000560055 670 ntTSL 3 BASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 SNX12-206ENST00000622259 661 ntTSL 5 BASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMC1BQ8NDV3 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
SMC1BQ8NDV3 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SMC1BQ8NDV3 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
SMC1BQ8NDV3 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SMC1BQ8NDV3 COX5BP2-201ENST00000392354 334 ntBASIC20.83■□□□□ 0.93
SMC1BQ8NDV3 FALEC-201ENST00000416894 566 ntTSL 3 BASIC20.83■□□□□ 0.93
SMC1BQ8NDV3 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC20.83■□□□□ 0.93
SMC1BQ8NDV3 FAM185BP-201ENST00000443595 716 ntBASIC20.83■□□□□ 0.93
SMC1BQ8NDV3 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC20.83■□□□□ 0.93
SMC1BQ8NDV3 AL513480.1-201ENST00000451731 511 ntBASIC20.83■□□□□ 0.93
SMC1BQ8NDV3 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC20.83■□□□□ 0.93
SMC1BQ8NDV3 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SMC1BQ8NDV3 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
SMC1BQ8NDV3 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC20.83■□□□□ 0.93
SMC1BQ8NDV3 CYB561-216ENST00000582297 897 ntTSL 3 BASIC20.83■□□□□ 0.93
SMC1BQ8NDV3 AC099522.2-201ENST00000607001 744 ntBASIC20.83■□□□□ 0.93
SMC1BQ8NDV3 AC017083.2-201ENST00000608069 979 ntBASIC20.83■□□□□ 0.93
SMC1BQ8NDV3 AC008677.1-201ENST00000519230 1561 ntBASIC20.83■□□□□ 0.92
SMC1BQ8NDV3 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SMC1BQ8NDV3 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.92
SMC1BQ8NDV3 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SMC1BQ8NDV3 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms