Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 AL022342.1-201ENST00000400363 863 ntBASIC16.43■□□□□ 0.22
BEST3Q8N1M1 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.43■□□□□ 0.22
BEST3Q8N1M1 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 KRT18P67-201ENST00000432816 1264 ntBASIC16.43■□□□□ 0.22
BEST3Q8N1M1 FGFR3P6-201ENST00000457012 610 ntBASIC16.43■□□□□ 0.22
BEST3Q8N1M1 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 AP001005.1-201ENST00000571755 1248 ntBASIC16.43■□□□□ 0.22
BEST3Q8N1M1 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.43■□□□□ 0.22
BEST3Q8N1M1 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
BEST3Q8N1M1 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 AC148477.8-201ENST00000624298 468 ntBASIC16.42■□□□□ 0.22
BEST3Q8N1M1 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
BEST3Q8N1M1 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms