Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SKA3Q8IX90 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC15.7■□□□□ 0.1
SKA3Q8IX90 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SKA3Q8IX90 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SKA3Q8IX90 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
SKA3Q8IX90 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC15.69■□□□□ 0.1
SKA3Q8IX90 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC15.69■□□□□ 0.1
SKA3Q8IX90 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SKA3Q8IX90 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SKA3Q8IX90 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SKA3Q8IX90 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SKA3Q8IX90 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SKA3Q8IX90 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SKA3Q8IX90 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
SKA3Q8IX90 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SKA3Q8IX90 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC15.69■□□□□ 0.1
SKA3Q8IX90 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SKA3Q8IX90 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
SKA3Q8IX90 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SKA3Q8IX90 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SKA3Q8IX90 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC15.69■□□□□ 0.1
SKA3Q8IX90 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SKA3Q8IX90 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SKA3Q8IX90 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SKA3Q8IX90 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SKA3Q8IX90 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SKA3Q8IX90 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SKA3Q8IX90 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SKA3Q8IX90 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SKA3Q8IX90 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC15.69■□□□□ 0.1
SKA3Q8IX90 TSSC2-201ENST00000450217 709 ntBASIC15.69■□□□□ 0.1
SKA3Q8IX90 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC15.69■□□□□ 0.1
SKA3Q8IX90 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SKA3Q8IX90 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC15.69■□□□□ 0.1
SKA3Q8IX90 KRT8P47-201ENST00000604727 1398 ntBASIC15.69■□□□□ 0.1
SKA3Q8IX90 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SKA3Q8IX90 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC15.69■□□□□ 0.1
SKA3Q8IX90 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC15.69■□□□□ 0.1
SKA3Q8IX90 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SKA3Q8IX90 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC15.69■□□□□ 0.1
SKA3Q8IX90 GATB-213ENST00000515812 1893 ntTSL 5 BASIC15.69■□□□□ 0.1
SKA3Q8IX90 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC15.69■□□□□ 0.1
SKA3Q8IX90 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SKA3Q8IX90 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SKA3Q8IX90 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SKA3Q8IX90 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SKA3Q8IX90 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SKA3Q8IX90 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SKA3Q8IX90 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SKA3Q8IX90 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SKA3Q8IX90 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SKA3Q8IX90 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC15.68■□□□□ 0.1
SKA3Q8IX90 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SKA3Q8IX90 SIRPAP1-201ENST00000448467 1770 ntBASIC15.68■□□□□ 0.1
SKA3Q8IX90 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC15.68■□□□□ 0.1
SKA3Q8IX90 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SKA3Q8IX90 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SKA3Q8IX90 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SKA3Q8IX90 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC15.68■□□□□ 0.1
SKA3Q8IX90 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SKA3Q8IX90 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC15.68■□□□□ 0.1
SKA3Q8IX90 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SKA3Q8IX90 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SKA3Q8IX90 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SKA3Q8IX90 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SKA3Q8IX90 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SKA3Q8IX90 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SKA3Q8IX90 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
SKA3Q8IX90 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
SKA3Q8IX90 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC15.68■□□□□ 0.1
SKA3Q8IX90 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SKA3Q8IX90 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
SKA3Q8IX90 AC012317.2-201ENST00000623305 2251 ntBASIC15.68■□□□□ 0.1
SKA3Q8IX90 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SKA3Q8IX90 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SKA3Q8IX90 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC15.67■□□□□ 0.1
SKA3Q8IX90 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SKA3Q8IX90 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SKA3Q8IX90 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SKA3Q8IX90 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
SKA3Q8IX90 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
SKA3Q8IX90 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC15.67■□□□□ 0.1
SKA3Q8IX90 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SKA3Q8IX90 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SKA3Q8IX90 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SKA3Q8IX90 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SKA3Q8IX90 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC15.67■□□□□ 0.1
SKA3Q8IX90 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SKA3Q8IX90 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SKA3Q8IX90 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC15.67■□□□□ 0.1
SKA3Q8IX90 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC15.67■□□□□ 0.1
SKA3Q8IX90 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC15.67■□□□□ 0.1
SKA3Q8IX90 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
SKA3Q8IX90 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC15.67■□□□□ 0.1
SKA3Q8IX90 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SKA3Q8IX90 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
SKA3Q8IX90 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC15.67■□□□□ 0.1
SKA3Q8IX90 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SKA3Q8IX90 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
SKA3Q8IX90 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms