Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC21.67■■□□□ 1.06
USP48Q86UV5 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP48Q86UV5 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC21.67■■□□□ 1.06
USP48Q86UV5 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
USP48Q86UV5 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC21.67■■□□□ 1.06
USP48Q86UV5 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC21.67■■□□□ 1.06
USP48Q86UV5 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP48Q86UV5 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP48Q86UV5 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC21.67■■□□□ 1.06
USP48Q86UV5 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC21.67■■□□□ 1.06
USP48Q86UV5 MTMR9LP-203ENST00000426597 1545 ntBASIC21.67■■□□□ 1.06
USP48Q86UV5 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC21.67■■□□□ 1.06
USP48Q86UV5 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
USP48Q86UV5 ABCD1P5-201ENST00000445663 754 ntBASIC21.67■■□□□ 1.06
USP48Q86UV5 DNAJB3-202ENST00000449667 1266 ntBASIC21.67■■□□□ 1.06
USP48Q86UV5 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC21.67■■□□□ 1.06
USP48Q86UV5 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC21.67■■□□□ 1.06
USP48Q86UV5 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC21.67■■□□□ 1.06
USP48Q86UV5 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC21.67■■□□□ 1.06
USP48Q86UV5 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC21.67■■□□□ 1.06
USP48Q86UV5 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC21.67■■□□□ 1.06
USP48Q86UV5 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
USP48Q86UV5 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP48Q86UV5 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC21.67■■□□□ 1.06
USP48Q86UV5 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP48Q86UV5 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP48Q86UV5 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP48Q86UV5 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC21.67■■□□□ 1.06
USP48Q86UV5 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
USP48Q86UV5 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC21.67■■□□□ 1.06
USP48Q86UV5 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC21.67■■□□□ 1.06
USP48Q86UV5 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC21.67■■□□□ 1.06
USP48Q86UV5 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP48Q86UV5 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
USP48Q86UV5 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP48Q86UV5 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP48Q86UV5 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP48Q86UV5 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC21.66■■□□□ 1.06
USP48Q86UV5 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
USP48Q86UV5 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP48Q86UV5 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
USP48Q86UV5 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP48Q86UV5 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP48Q86UV5 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
USP48Q86UV5 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP48Q86UV5 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP48Q86UV5 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC21.66■■□□□ 1.06
USP48Q86UV5 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC21.66■■□□□ 1.06
USP48Q86UV5 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
USP48Q86UV5 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP48Q86UV5 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP48Q86UV5 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP48Q86UV5 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP48Q86UV5 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC21.66■■□□□ 1.06
USP48Q86UV5 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC21.66■■□□□ 1.06
USP48Q86UV5 AC007967.2-201ENST00000432613 625 ntBASIC21.66■■□□□ 1.06
USP48Q86UV5 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC21.66■■□□□ 1.06
USP48Q86UV5 AC025062.2-201ENST00000605477 670 ntBASIC21.66■■□□□ 1.06
USP48Q86UV5 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
USP48Q86UV5 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP48Q86UV5 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP48Q86UV5 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
USP48Q86UV5 AL356309.3-201ENST00000624132 1934 ntBASIC21.66■■□□□ 1.06
USP48Q86UV5 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP48Q86UV5 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP48Q86UV5 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC21.66■■□□□ 1.06
USP48Q86UV5 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC21.66■■□□□ 1.06
USP48Q86UV5 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
USP48Q86UV5 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP48Q86UV5 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP48Q86UV5 AC135776.1-201ENST00000319817 2481 ntBASIC21.65■■□□□ 1.06
USP48Q86UV5 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC21.65■■□□□ 1.06
USP48Q86UV5 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
USP48Q86UV5 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP48Q86UV5 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
USP48Q86UV5 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP48Q86UV5 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC21.65■■□□□ 1.06
USP48Q86UV5 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP48Q86UV5 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC21.65■■□□□ 1.06
USP48Q86UV5 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
USP48Q86UV5 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP48Q86UV5 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP48Q86UV5 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
USP48Q86UV5 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP48Q86UV5 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP48Q86UV5 INIP-202ENST00000374236 874 ntTSL 2 BASIC21.65■■□□□ 1.06
USP48Q86UV5 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP48Q86UV5 AC023274.1-201ENST00000418278 595 ntBASIC21.65■■□□□ 1.06
USP48Q86UV5 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC21.65■■□□□ 1.06
USP48Q86UV5 HS6ST1P1-201ENST00000481504 1234 ntBASIC21.65■■□□□ 1.06
USP48Q86UV5 RNA5SP416-201ENST00000516838 111 ntBASIC21.65■■□□□ 1.06
USP48Q86UV5 UNC93B6-202ENST00000528242 690 ntBASIC21.65■■□□□ 1.06
USP48Q86UV5 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC21.65■■□□□ 1.06
USP48Q86UV5 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC21.65■■□□□ 1.06
USP48Q86UV5 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
USP48Q86UV5 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC21.65■■□□□ 1.06
USP48Q86UV5 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
USP48Q86UV5 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP48Q86UV5 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP48Q86UV5 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms