Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHD9Q3L8U1 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
CHD9Q3L8U1 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHD9Q3L8U1 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CHD9Q3L8U1 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CHD9Q3L8U1 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHD9Q3L8U1 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC18.58■□□□□ 0.56
CHD9Q3L8U1 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.58■□□□□ 0.56
CHD9Q3L8U1 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC18.58■□□□□ 0.56
CHD9Q3L8U1 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHD9Q3L8U1 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.56
CHD9Q3L8U1 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.56
CHD9Q3L8U1 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
CHD9Q3L8U1 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.58■□□□□ 0.56
CHD9Q3L8U1 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CHD9Q3L8U1 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CHD9Q3L8U1 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHD9Q3L8U1 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHD9Q3L8U1 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHD9Q3L8U1 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.57■□□□□ 0.56
CHD9Q3L8U1 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHD9Q3L8U1 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.57■□□□□ 0.56
CHD9Q3L8U1 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
CHD9Q3L8U1 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.57■□□□□ 0.56
CHD9Q3L8U1 AC103564.2-201ENST00000432853 1299 ntBASIC18.57■□□□□ 0.56
CHD9Q3L8U1 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC18.57■□□□□ 0.56
CHD9Q3L8U1 CXCL1P1-201ENST00000502804 216 ntBASIC18.57■□□□□ 0.56
CHD9Q3L8U1 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC18.57■□□□□ 0.56
CHD9Q3L8U1 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC18.57■□□□□ 0.56
CHD9Q3L8U1 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHD9Q3L8U1 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
CHD9Q3L8U1 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHD9Q3L8U1 CLDN5-201ENST00000403084 2357 ntBASIC18.57■□□□□ 0.56
CHD9Q3L8U1 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHD9Q3L8U1 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.57■□□□□ 0.56
CHD9Q3L8U1 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHD9Q3L8U1 AL592309.1-201ENST00000443127 649 ntBASIC18.57■□□□□ 0.56
CHD9Q3L8U1 SPDYE11-202ENST00000450699 704 ntBASIC18.57■□□□□ 0.56
CHD9Q3L8U1 AL135744.1-201ENST00000565098 629 ntBASIC18.57■□□□□ 0.56
CHD9Q3L8U1 SPDYE9P-201ENST00000570642 692 ntBASIC18.57■□□□□ 0.56
CHD9Q3L8U1 SPDYE10P-202ENST00000612005 668 ntBASIC18.57■□□□□ 0.56
CHD9Q3L8U1 SPDYE8P-202ENST00000612377 668 ntBASIC18.57■□□□□ 0.56
CHD9Q3L8U1 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CHD9Q3L8U1 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHD9Q3L8U1 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHD9Q3L8U1 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHD9Q3L8U1 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.57■□□□□ 0.56
CHD9Q3L8U1 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHD9Q3L8U1 CYP51A1P2-201ENST00000419457 1499 ntBASIC18.57■□□□□ 0.56
CHD9Q3L8U1 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 TREML5P-201ENST00000421694 576 ntBASIC18.56■□□□□ 0.56
CHD9Q3L8U1 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 AC243562.1-201ENST00000560672 389 ntBASIC18.56■□□□□ 0.56
CHD9Q3L8U1 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 AL390754.1-201ENST00000619088 582 ntBASIC18.56■□□□□ 0.56
CHD9Q3L8U1 AC084121.4-201ENST00000641598 221 ntBASIC18.56■□□□□ 0.56
CHD9Q3L8U1 AF228730.8-201ENST00000642140 221 ntBASIC18.56■□□□□ 0.56
CHD9Q3L8U1 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 LINC01225-203ENST00000563550 1244 ntBASIC18.56■□□□□ 0.56
CHD9Q3L8U1 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 AC107890.1-201ENST00000422478 521 ntBASIC18.56■□□□□ 0.56
CHD9Q3L8U1 PPP6R2P1-201ENST00000450880 1275 ntBASIC18.56■□□□□ 0.56
CHD9Q3L8U1 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC18.56■□□□□ 0.56
CHD9Q3L8U1 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHD9Q3L8U1 LINC00982-205ENST00000420957 435 ntBASIC18.55■□□□□ 0.56
CHD9Q3L8U1 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms