Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
COL28A1Q2UY09 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL28A1Q2UY09 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL28A1Q2UY09 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL28A1Q2UY09 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL28A1Q2UY09 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL28A1Q2UY09 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17■□□□□ 0.31
COL28A1Q2UY09 AC005034.1-201ENST00000426657 489 ntBASIC17■□□□□ 0.31
COL28A1Q2UY09 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17■□□□□ 0.31
COL28A1Q2UY09 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL28A1Q2UY09 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
COL28A1Q2UY09 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17■□□□□ 0.31
COL28A1Q2UY09 AC009947.1-201ENST00000444350 727 ntBASIC17■□□□□ 0.31
COL28A1Q2UY09 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC17■□□□□ 0.31
COL28A1Q2UY09 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17■□□□□ 0.31
COL28A1Q2UY09 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17■□□□□ 0.31
COL28A1Q2UY09 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
COL28A1Q2UY09 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
COL28A1Q2UY09 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17■□□□□ 0.31
COL28A1Q2UY09 AC138761.1-201ENST00000584393 385 ntBASIC17■□□□□ 0.31
COL28A1Q2UY09 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17■□□□□ 0.31
COL28A1Q2UY09 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17■□□□□ 0.31
COL28A1Q2UY09 AC064836.3-201ENST00000607928 673 ntBASIC17■□□□□ 0.31
COL28A1Q2UY09 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17■□□□□ 0.31
COL28A1Q2UY09 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17■□□□□ 0.31
COL28A1Q2UY09 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL28A1Q2UY09 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL28A1Q2UY09 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL28A1Q2UY09 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL28A1Q2UY09 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17■□□□□ 0.31
COL28A1Q2UY09 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL28A1Q2UY09 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
COL28A1Q2UY09 AL356309.3-201ENST00000624132 1934 ntBASIC17■□□□□ 0.31
COL28A1Q2UY09 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL28A1Q2UY09 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
COL28A1Q2UY09 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 MIR3180-4-201ENST00000582223 153 ntBASIC16.99■□□□□ 0.31
COL28A1Q2UY09 AL035252.4-201ENST00000624174 288 ntBASIC16.99■□□□□ 0.31
COL28A1Q2UY09 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 AC034236.2-201ENST00000606662 1610 ntBASIC16.99■□□□□ 0.31
COL28A1Q2UY09 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL28A1Q2UY09 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 TAF8-206ENST00000472818 719 ntTSL 2 BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms