Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SF3A1Q15459 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SF3A1Q15459 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.47■□□□□ 0.87
SF3A1Q15459 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC20.47■□□□□ 0.87
SF3A1Q15459 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
SF3A1Q15459 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC20.47■□□□□ 0.87
SF3A1Q15459 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC20.47■□□□□ 0.87
SF3A1Q15459 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC20.47■□□□□ 0.87
SF3A1Q15459 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SF3A1Q15459 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SF3A1Q15459 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SF3A1Q15459 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SF3A1Q15459 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SF3A1Q15459 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SF3A1Q15459 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SF3A1Q15459 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SF3A1Q15459 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
SF3A1Q15459 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SF3A1Q15459 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SF3A1Q15459 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
SF3A1Q15459 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
SF3A1Q15459 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC20.46■□□□□ 0.87
SF3A1Q15459 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
SF3A1Q15459 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SF3A1Q15459 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
SF3A1Q15459 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SF3A1Q15459 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC20.46■□□□□ 0.87
SF3A1Q15459 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
SF3A1Q15459 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SF3A1Q15459 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SF3A1Q15459 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
SF3A1Q15459 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SF3A1Q15459 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SF3A1Q15459 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SF3A1Q15459 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SF3A1Q15459 KRT18P48-201ENST00000434763 852 ntBASIC20.46■□□□□ 0.87
SF3A1Q15459 KRT18P65-201ENST00000439811 1286 ntBASIC20.46■□□□□ 0.87
SF3A1Q15459 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC20.46■□□□□ 0.87
SF3A1Q15459 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SF3A1Q15459 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
SF3A1Q15459 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SF3A1Q15459 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SF3A1Q15459 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SF3A1Q15459 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
SF3A1Q15459 AC009949.1-201ENST00000623048 1830 ntBASIC20.46■□□□□ 0.87
SF3A1Q15459 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SF3A1Q15459 AC133963.1-201ENST00000504166 1679 ntBASIC20.45■□□□□ 0.86
SF3A1Q15459 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SF3A1Q15459 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SF3A1Q15459 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.45■□□□□ 0.86
SF3A1Q15459 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SF3A1Q15459 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SF3A1Q15459 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC20.45■□□□□ 0.86
SF3A1Q15459 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SF3A1Q15459 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SF3A1Q15459 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SF3A1Q15459 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.45■□□□□ 0.86
SF3A1Q15459 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
SF3A1Q15459 TSPY5P-201ENST00000426936 936 ntBASIC20.45■□□□□ 0.86
SF3A1Q15459 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.45■□□□□ 0.86
SF3A1Q15459 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC20.45■□□□□ 0.86
SF3A1Q15459 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.45■□□□□ 0.86
SF3A1Q15459 LITAF-220ENST00000620789 692 ntTSL 5 BASIC20.45■□□□□ 0.86
SF3A1Q15459 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SF3A1Q15459 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SF3A1Q15459 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SF3A1Q15459 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.45■□□□□ 0.86
SF3A1Q15459 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SF3A1Q15459 AL023806.1-201ENST00000603994 1649 ntBASIC20.45■□□□□ 0.86
SF3A1Q15459 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SF3A1Q15459 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SF3A1Q15459 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SF3A1Q15459 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SF3A1Q15459 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SF3A1Q15459 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SF3A1Q15459 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SF3A1Q15459 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SF3A1Q15459 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC20.44■□□□□ 0.86
SF3A1Q15459 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC20.44■□□□□ 0.86
SF3A1Q15459 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC20.44■□□□□ 0.86
SF3A1Q15459 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SF3A1Q15459 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
SF3A1Q15459 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC20.44■□□□□ 0.86
SF3A1Q15459 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC20.44■□□□□ 0.86
SF3A1Q15459 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SF3A1Q15459 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
SF3A1Q15459 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SF3A1Q15459 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC20.44■□□□□ 0.86
SF3A1Q15459 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SF3A1Q15459 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SF3A1Q15459 RNF152P1-201ENST00000397754 604 ntBASIC20.44■□□□□ 0.86
SF3A1Q15459 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.44■□□□□ 0.86
SF3A1Q15459 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SF3A1Q15459 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.44■□□□□ 0.86
SF3A1Q15459 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SF3A1Q15459 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
SF3A1Q15459 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SF3A1Q15459 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC20.44■□□□□ 0.86
SF3A1Q15459 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SF3A1Q15459 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms