Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.27■□□□□ 0.52
NEK3P51956 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NEK3P51956 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.27■□□□□ 0.52
NEK3P51956 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
NEK3P51956 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
NEK3P51956 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
NEK3P51956 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NEK3P51956 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NEK3P51956 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.27■□□□□ 0.51
NEK3P51956 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
NEK3P51956 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
NEK3P51956 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
NEK3P51956 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.51
NEK3P51956 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.26■□□□□ 0.51
NEK3P51956 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
NEK3P51956 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NEK3P51956 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NEK3P51956 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NEK3P51956 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.26■□□□□ 0.51
NEK3P51956 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NEK3P51956 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
NEK3P51956 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NEK3P51956 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NEK3P51956 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
NEK3P51956 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NEK3P51956 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NEK3P51956 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.26■□□□□ 0.51
NEK3P51956 NUS1P1-201ENST00000446295 882 ntBASIC18.26■□□□□ 0.51
NEK3P51956 VENTXP7-201ENST00000475503 772 ntBASIC18.26■□□□□ 0.51
NEK3P51956 AC104819.1-201ENST00000504587 486 ntBASIC18.26■□□□□ 0.51
NEK3P51956 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NEK3P51956 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.26■□□□□ 0.51
NEK3P51956 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.26■□□□□ 0.51
NEK3P51956 Z69720.1-201ENST00000601483 472 ntBASIC18.26■□□□□ 0.51
NEK3P51956 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.26■□□□□ 0.51
NEK3P51956 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18.26■□□□□ 0.51
NEK3P51956 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.26■□□□□ 0.51
NEK3P51956 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NEK3P51956 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NEK3P51956 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.26■□□□□ 0.51
NEK3P51956 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NEK3P51956 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NEK3P51956 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NEK3P51956 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.26■□□□□ 0.51
NEK3P51956 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NEK3P51956 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NEK3P51956 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
NEK3P51956 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NEK3P51956 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
NEK3P51956 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
NEK3P51956 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NEK3P51956 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NEK3P51956 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NEK3P51956 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
NEK3P51956 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NEK3P51956 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NEK3P51956 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.25■□□□□ 0.51
NEK3P51956 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.25■□□□□ 0.51
NEK3P51956 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NEK3P51956 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.25■□□□□ 0.51
NEK3P51956 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NEK3P51956 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
NEK3P51956 AL691432.3-201ENST00000621860 400 ntBASIC18.25■□□□□ 0.51
NEK3P51956 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.25■□□□□ 0.51
NEK3P51956 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
NEK3P51956 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
NEK3P51956 AC141586.5-201ENST00000624546 2050 ntBASIC18.25■□□□□ 0.51
NEK3P51956 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NEK3P51956 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.25■□□□□ 0.51
NEK3P51956 AC233702.3-201ENST00000578656 1387 ntBASIC18.25■□□□□ 0.51
NEK3P51956 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.25■□□□□ 0.51
NEK3P51956 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
NEK3P51956 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.25■□□□□ 0.51
NEK3P51956 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NEK3P51956 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.25■□□□□ 0.51
NEK3P51956 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.25■□□□□ 0.51
NEK3P51956 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.24■□□□□ 0.51
NEK3P51956 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
NEK3P51956 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
NEK3P51956 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.24■□□□□ 0.51
NEK3P51956 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NEK3P51956 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
NEK3P51956 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
NEK3P51956 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.24■□□□□ 0.51
NEK3P51956 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
NEK3P51956 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NEK3P51956 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NEK3P51956 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NEK3P51956 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
NEK3P51956 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
NEK3P51956 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
NEK3P51956 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.24■□□□□ 0.51
NEK3P51956 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.24■□□□□ 0.51
NEK3P51956 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
NEK3P51956 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NEK3P51956 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.24■□□□□ 0.51
NEK3P51956 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.24■□□□□ 0.51
NEK3P51956 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
NEK3P51956 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
NEK3P51956 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms