Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.72■□□□□ 0.59
LHX1P48742 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.72■□□□□ 0.59
LHX1P48742 AC132938.5-201ENST00000624980 1813 ntBASIC18.72■□□□□ 0.59
LHX1P48742 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LHX1P48742 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.72■□□□□ 0.59
LHX1P48742 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LHX1P48742 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC18.72■□□□□ 0.59
LHX1P48742 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LHX1P48742 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LHX1P48742 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LHX1P48742 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LHX1P48742 RPS2P28-201ENST00000314255 741 ntBASIC18.72■□□□□ 0.59
LHX1P48742 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LHX1P48742 AC003669.1-201ENST00000334569 611 ntBASIC18.72■□□□□ 0.59
LHX1P48742 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LHX1P48742 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
LHX1P48742 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LHX1P48742 AL020989.1-201ENST00000422979 469 ntBASIC18.72■□□□□ 0.59
LHX1P48742 PRYP5-201ENST00000451909 266 ntBASIC18.72■□□□□ 0.59
LHX1P48742 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
LHX1P48742 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.72■□□□□ 0.59
LHX1P48742 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LHX1P48742 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC18.72■□□□□ 0.59
LHX1P48742 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
LHX1P48742 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
LHX1P48742 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LHX1P48742 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LHX1P48742 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
LHX1P48742 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.72■□□□□ 0.59
LHX1P48742 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LHX1P48742 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
LHX1P48742 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
LHX1P48742 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LHX1P48742 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.72■□□□□ 0.59
LHX1P48742 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.71■□□□□ 0.59
LHX1P48742 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
LHX1P48742 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
LHX1P48742 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.71■□□□□ 0.59
LHX1P48742 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LHX1P48742 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.71■□□□□ 0.59
LHX1P48742 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LHX1P48742 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LHX1P48742 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LHX1P48742 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
LHX1P48742 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
LHX1P48742 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.71■□□□□ 0.59
LHX1P48742 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
LHX1P48742 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LHX1P48742 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
LHX1P48742 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
LHX1P48742 AL031284.1-201ENST00000419297 478 ntBASIC18.71■□□□□ 0.59
LHX1P48742 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
LHX1P48742 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LHX1P48742 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LHX1P48742 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.71■□□□□ 0.59
LHX1P48742 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC18.71■□□□□ 0.59
LHX1P48742 AP001005.1-201ENST00000571755 1248 ntBASIC18.71■□□□□ 0.59
LHX1P48742 STK25P1-201ENST00000585406 838 ntBASIC18.71■□□□□ 0.59
LHX1P48742 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LHX1P48742 AL022326.1-202ENST00000641533 845 ntBASIC18.71■□□□□ 0.59
LHX1P48742 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
LHX1P48742 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.71■□□□□ 0.59
LHX1P48742 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LHX1P48742 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LHX1P48742 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LHX1P48742 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LHX1P48742 HLA-A-201ENST00000376802 1334 ntBASIC18.71■□□□□ 0.59
LHX1P48742 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.71■□□□□ 0.59
LHX1P48742 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LHX1P48742 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.71■□□□□ 0.59
LHX1P48742 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LHX1P48742 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.71■□□□□ 0.59
LHX1P48742 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
LHX1P48742 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.58
LHX1P48742 NEFHP1-201ENST00000412845 2629 ntBASIC18.7■□□□□ 0.58
LHX1P48742 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LHX1P48742 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LHX1P48742 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.7■□□□□ 0.58
LHX1P48742 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LHX1P48742 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.7■□□□□ 0.58
LHX1P48742 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.7■□□□□ 0.58
LHX1P48742 KLF4P1-201ENST00000412782 1185 ntBASIC18.7■□□□□ 0.58
LHX1P48742 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.7■□□□□ 0.58
LHX1P48742 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.7■□□□□ 0.58
LHX1P48742 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.7■□□□□ 0.58
LHX1P48742 MTDHP4-201ENST00000600287 670 ntBASIC18.7■□□□□ 0.58
LHX1P48742 LINC01451-201ENST00000623792 534 ntBASIC18.7■□□□□ 0.58
LHX1P48742 AC148477.8-201ENST00000624298 468 ntBASIC18.7■□□□□ 0.58
LHX1P48742 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LHX1P48742 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
LHX1P48742 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LHX1P48742 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.7■□□□□ 0.58
LHX1P48742 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.7■□□□□ 0.58
LHX1P48742 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.69■□□□□ 0.58
LHX1P48742 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LHX1P48742 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
LHX1P48742 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
LHX1P48742 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LHX1P48742 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
LHX1P48742 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms