Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMARCA1P28370 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMARCA1P28370 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
SMARCA1P28370 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.83
SMARCA1P28370 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SMARCA1P28370 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC20.27■□□□□ 0.83
SMARCA1P28370 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SMARCA1P28370 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMARCA1P28370 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SMARCA1P28370 CD276-203ENST00000537340 2439 ntTSL 2 BASIC20.26■□□□□ 0.83
SMARCA1P28370 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMARCA1P28370 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMARCA1P28370 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SMARCA1P28370 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SMARCA1P28370 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMARCA1P28370 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMARCA1P28370 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
SMARCA1P28370 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMARCA1P28370 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SMARCA1P28370 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SMARCA1P28370 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC20.26■□□□□ 0.83
SMARCA1P28370 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SMARCA1P28370 SIGLEC30P-201ENST00000455569 941 ntBASIC20.26■□□□□ 0.83
SMARCA1P28370 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC20.26■□□□□ 0.83
SMARCA1P28370 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC20.26■□□□□ 0.83
SMARCA1P28370 TP73-AS1-207ENST00000624167 988 ntBASIC20.26■□□□□ 0.83
SMARCA1P28370 AL022326.1-202ENST00000641533 845 ntBASIC20.26■□□□□ 0.83
SMARCA1P28370 AC068880.1-201ENST00000507289 2297 ntBASIC20.26■□□□□ 0.83
SMARCA1P28370 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
SMARCA1P28370 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SMARCA1P28370 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
SMARCA1P28370 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
SMARCA1P28370 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMARCA1P28370 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SMARCA1P28370 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMARCA1P28370 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
SMARCA1P28370 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMARCA1P28370 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC20.25■□□□□ 0.83
SMARCA1P28370 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SMARCA1P28370 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SMARCA1P28370 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC20.25■□□□□ 0.83
SMARCA1P28370 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMARCA1P28370 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMARCA1P28370 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SMARCA1P28370 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMARCA1P28370 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC20.25■□□□□ 0.83
SMARCA1P28370 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC20.25■□□□□ 0.83
SMARCA1P28370 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SMARCA1P28370 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC20.25■□□□□ 0.83
SMARCA1P28370 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.25■□□□□ 0.83
SMARCA1P28370 AL121894.2-201ENST00000602977 491 ntBASIC20.25■□□□□ 0.83
SMARCA1P28370 AC064862.7-201ENST00000604520 867 ntBASIC20.25■□□□□ 0.83
SMARCA1P28370 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SMARCA1P28370 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC20.25■□□□□ 0.83
SMARCA1P28370 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMARCA1P28370 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC20.25■□□□□ 0.83
SMARCA1P28370 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.25■□□□□ 0.83
SMARCA1P28370 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMARCA1P28370 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SMARCA1P28370 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMARCA1P28370 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
SMARCA1P28370 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMARCA1P28370 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMARCA1P28370 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC20.24■□□□□ 0.83
SMARCA1P28370 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMARCA1P28370 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMARCA1P28370 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMARCA1P28370 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC20.24■□□□□ 0.83
SMARCA1P28370 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SMARCA1P28370 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SMARCA1P28370 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMARCA1P28370 FAM197Y8-203ENST00000450145 560 ntBASIC20.24■□□□□ 0.83
SMARCA1P28370 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC20.24■□□□□ 0.83
SMARCA1P28370 AC021087.4-201ENST00000563761 564 ntBASIC20.24■□□□□ 0.83
SMARCA1P28370 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC20.24■□□□□ 0.83
SMARCA1P28370 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC20.24■□□□□ 0.83
SMARCA1P28370 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC20.24■□□□□ 0.83
SMARCA1P28370 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC20.24■□□□□ 0.83
SMARCA1P28370 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC20.24■□□□□ 0.83
SMARCA1P28370 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMARCA1P28370 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMARCA1P28370 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMARCA1P28370 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMARCA1P28370 AC007613.1-201ENST00000572811 2597 ntBASIC20.24■□□□□ 0.83
SMARCA1P28370 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMARCA1P28370 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC20.24■□□□□ 0.83
SMARCA1P28370 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMARCA1P28370 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMARCA1P28370 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMARCA1P28370 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMARCA1P28370 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMARCA1P28370 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMARCA1P28370 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMARCA1P28370 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC20.23■□□□□ 0.83
SMARCA1P28370 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMARCA1P28370 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMARCA1P28370 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMARCA1P28370 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SMARCA1P28370 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SMARCA1P28370 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms